View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9533_low_2 (Length: 455)

Name: NF9533_low_2
Description: NF9533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9533_low_2
NF9533_low_2
[»] chr3 (14 HSPs)
chr3 (18-445)||(5484450-5484875)
chr3 (200-445)||(5525676-5525919)
chr3 (260-445)||(5828158-5828344)
chr3 (258-445)||(5502897-5503082)
chr3 (258-442)||(5490083-5490266)
chr3 (260-445)||(5454907-5455092)
chr3 (262-445)||(20343528-20343712)
chr3 (258-429)||(5446346-5446517)
chr3 (282-429)||(5854204-5854351)
chr3 (329-445)||(5848887-5849003)
chr3 (328-441)||(5802494-5802607)
chr3 (142-206)||(5525588-5525652)
chr3 (20-80)||(5525497-5525557)
chr3 (18-86)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (258-429)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 5484450 - 5484875
Alignment:
Q  18 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaaggaaaaaagatctatagggaaaagtgaaaaga 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5484450 caagtttctcgtattctttatatgatctgtaggttgaagtaaatgtcattcaagaagcagataaagaaggaaaaaagatctacagggaaaagtgaaaaga 5484549  T
Q  118 gaattattaatgccgcgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484550 gaattattaatgccacgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 5484649  T
Q  218 ctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgt 317  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5484650 ctattaattaaacagttaaggtatcagtaccag--ctatcacacaaatgatgaaataaataaatttgtgctatatatctgactgaagagataaaatatgt 5484747  T
Q  318 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaacca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||| |||||||||||||||||||||||||||||    
T  5484748 ctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatttcttgtcctacgtcaggatgttttctcatgtccacaatgttgccaaacca 5484847  T
Q  418 aagtaagcagccgctcccaccatctctg 445  Q
    |||||||||||| |||||||||||||||    
T  5484848 aagtaagcagccactcccaccatctctg 5484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 200 - 445
Target Start/End: Original strand, 5525676 - 5525919
Alignment:
Q  200 atgttttgtaatcttttcctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatttgtgcaatatatctgac 299  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||  |||| |||||||| ||    
T  5525676 atgttttgtaatctattcctattaattaaactgttaaggtagcagtgccagttctatcacacaaatgatgaaatatataaat--gtgctatatatctaac 5525773  T
Q  300 tgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtc 399  Q
    |||| ||  |||||||||  | |||| | |||||||||||||||||||||||||  |||||||||||||||||||||   |||||||| |||||||||||    
T  5525774 tgaaaaggaaaaatatgtgataggaagttaaaataccaagttctgaagatgccaatcgtatgtaaatgtcttgtcctacgtcaggatgttttctcatgtc 5525873  T
Q  400 cacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 445  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||    
T  5525874 cacaatgttgttaaaccaaagtaagcagccactcccaccatctctg 5525919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 260 - 445
Target Start/End: Complemental strand, 5828344 - 5828158
Alignment:
Q  260 acaaatgatgaa-ataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgt 358  Q
    ||||||| |||| ||| |||||||||| | ||  |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||    
T  5828344 acaaatgctgaatatatataaatttgtcctatgcatctaactgaagaggtaaaatatgtctttggaaatgaaaataccaagttcggaagatgcgagtcgt 5828245  T
Q  359 atgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 445  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||    
T  5828244 atgtaaatgtcttgtcctacgtcaggatgttttctcatgtccacaatattgttaaaccaaagtaagcagccactcccaccatctctg 5828158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 258 - 445
Target Start/End: Original strand, 5502897 - 5503082
Alignment:
Q  258 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 357  Q
    ||||||||| |||||||  ||||||| |||  ||||||| ||||||  || |||||||||  | | |||||||||||||||| |||||||||||||||||    
T  5502897 acacaaatggtgaaatatgtaaatttatgc--tatatctaactgaaaggacaaaatatgtaatagcaaatgaaaataccaagctctgaagatgccagccg 5502994  T
Q  358 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 445  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||    
T  5502995 tatgtaaatgtcttgtccttggtctggatgttttctcatgtcgacaatgttgtcaaaccaaagtaagcagccactcccaccatctctg 5503082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 258 - 442
Target Start/End: Original strand, 5490083 - 5490266
Alignment:
Q  258 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 357  Q
    ||||||||| |||||||  ||||||| ||| |||||||| |||||| ||| |||||||||  |  ||||||||||||||||||||||||||||||| |||    
T  5490083 acacaaatggtgaaatat-taaatttatgctatatatctaactgaaaagacaaaatatgtaataagaaatgaaaataccaagttctgaagatgccatccg 5490181  T
Q  358 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatct 442  Q
    ||||||||||||||||||||| ||  |||| |||||||||||||||||||||  ||||||||||| |||||| ||||||||||||    
T  5490182 tatgtaaatgtcttgtccttggtcttgatgttttctcatgtccacaatgttgttaaaccaaagtatgcagccactcccaccatct 5490266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 260 - 445
Target Start/End: Original strand, 5454907 - 5455092
Alignment:
Q  260 acaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgta 359  Q
    ||||||| ||||||| |||| ||| ||| |||||||| |||||| ||| |||||||||  |  |||| |||||||||||||||||||||||||| |||||    
T  5454907 acaaatggtgaaatatataagtttatgctatatatctaactgaaaagacaaaatatgtaataagaaaagaaaataccaagttctgaagatgccatccgta 5455006  T
Q  360 tgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 445  Q
    ||||||||||||||||||| ||  |||| |||||||||||||||||||||  ||||||||||| |||||| |||||| ||||||||    
T  5455007 tgtaaatgtcttgtccttggtcttgatgttttctcatgtccacaatgttgtgaaaccaaagtatgcagccactcccatcatctctg 5455092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 262 - 445
Target Start/End: Original strand, 20343528 - 20343712
Alignment:
Q  262 aaatgatgaaataaat-aaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtat 360  Q
    ||||| ||||||| || ||||||||||||||||||| |||| | ||  |||| ||||  | |||||||||||||||||||||||||||||| ||||||||    
T  20343528 aaatgctgaaatatatgaaatttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatgctagccgtat 20343627  T
Q  361 gtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagccgctcccaccatctctg 445  Q
     ||||||||||||||||| ||  |||| ||||||||||||| ||| ||| |||||||||||||||| || |||||||||||||||    
T  20343628 ataaatgtcttgtccttggtctcgatgttttctcatgtccaaaatattgtcaaaccaaagtaagcaaccactcccaccatctctg 20343712  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 258 - 429
Target Start/End: Original strand, 5446346 - 5446517
Alignment:
Q  258 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 357  Q
    ||||||||| |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||||||||||||||||||||||||    
T  5446346 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 5446445  T
Q  358 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 429  Q
    ||||||||||||||||||||| ||  ||||  |||||||||| ||||||| | ||||||| |||||||||||    
T  5446446 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 5446517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 282 - 429
Target Start/End: Complemental strand, 5854351 - 5854204
Alignment:
Q  282 ttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatc 381  Q
    |||||| ||||||| ||||||| ||  |||| ||||  | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  5854351 ttgtgctatatatcagactgaaaaggcaaaagatgtaataggaaatgtaaataccaagttctgaagatgccagccgtatgaaaatgtcttgtccttggtc 5854252  T
Q  382 aggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 429  Q
     ||||| |||||||| || ||||||||| |||||||||||||||||||    
T  5854251 tggatgttttctcatatcaacaatgttgtcaaaccaaagtaagcagcc 5854204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 329 - 445
Target Start/End: Complemental strand, 5849003 - 5848887
Alignment:
Q  329 aaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagc 428  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||   |||||||| |||||||||||||||||||||  |||||||||||||||||    
T  5849003 aaaataccgagttctgaagatgcgagtcgtatgtaaatgtcttgtcctatgtcaggatgttttctcatgtccacaatgttgttaaaccaaagtaagcagc 5848904  T
Q  429 cgctcccaccatctctg 445  Q
    | |||||||||||||||    
T  5848903 cactcccaccatctctg 5848887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 328 - 441
Target Start/End: Complemental strand, 5802607 - 5802494
Alignment:
Q  328 gaaaataccaagttctgaagatgccagccgtatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcag 427  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||   || ||||| ||||||||||||| ||| |||  ||||||||||||||||    
T  5802607 gaaaataccaagttctgaagatgcgagtcgtatgtaaatgtcttgtcctacgtctggatgttttctcatgtccataatattgttaaaccaaagtaagcag 5802508  T
Q  428 ccgctcccaccatc 441  Q
    || || ||||||||    
T  5802507 ccactaccaccatc 5802494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 5525588 - 5525652
Alignment:
Q  142 atgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgtttt 206  Q
    ||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  5525588 atgttttgaacggtactcaattcctagaggttgattattttcagaagttggcatttatgtgtttt 5525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 5525497 - 5525557
Alignment:
Q  20 agtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagata 80  Q
    |||| ||| |||||||| |||||||||  | |||||||||||||||||||| |||||||||    
T  5525497 agttcctcttattctttttatgatctgatggttgaagtaaatgtcagtcaacaagcagata 5525557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 20343322 - 20343390
Alignment:
Q  18 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaag 86  Q
    |||||| ||| |||||||| |||||||||  | ||||| |||||||||||||| |||||| || |||||    
T  20343322 caagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaag 20343390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 258 - 429
Target Start/End: Complemental strand, 25809466 - 25809295
Alignment:
Q  258 acacaaatgatgaaataaataaatttgtgcaatatatctgactgaagagataaaatatgtctttggaaatgaaaataccaagttctgaagatgccagccg 357  Q
    ||||||||| |||||||  ||||||| ||| |||||||| ||||||  || |||||||||  |   ||||||||||||||||||||||||||||||||||    
T  25809466 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatgccagccg 25809367  T
Q  358 tatgtaaatgtcttgtccttgatcaggatgctttctcatgtccacaatgttgccaaaccaaagtaagcagcc 429  Q
    ||||||||||||||||||||| ||  ||||  |||||||||| ||||||| | ||||||| |||||||||||    
T  25809366 tatgtaaatgtcttgtccttggtcttgatgtattctcatgtcaacaatgtcgtcaaaccagagtaagcagcc 25809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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