View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9533_low_6 (Length: 293)
Name: NF9533_low_6
Description: NF9533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9533_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 17822129 - 17822390
Alignment:
| Q |
19 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17822129 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
17822228 |
T |
|
| Q |
119 |
ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
218 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17822229 |
ttaacagcagcatttccaccagctttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
17822328 |
T |
|
| Q |
219 |
ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17822329 |
ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct |
17822390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 17779867 - 17780101
Alignment:
| Q |
46 |
tttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagactta |
145 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||| | |||| | ||| || |||| |
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|
| T |
17779867 |
tttgccaaagtattccatgtagccatttggagggtcaatgtcctcattgatcttctcatattcaactgtccatttagatgcagcagtgccatcaccctta |
17779966 |
T |
|
| Q |
146 |
tcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatctt |
245 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||| |||| |
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|
| T |
17779967 |
tcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagcttgaaaatgatttttttgttctgttcatcaacttctt |
17780066 |
T |
|
| Q |
246 |
caataatctcatgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
17780067 |
caagactctcatgacatgtgtgtaccttgccatct |
17780101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 17800820 - 17801081
Alignment:
| Q |
19 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
118 |
Q |
| |
|
|||||||||||| || |||||||| | |||| ||||| ||||| ||||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||| |
|
|
| T |
17800820 |
aagatgagcatcaatatctctagtacatttgcataagtaatccatccagccatttggagggtcaatatcctcgttgatcttcacatattcaacagtccat |
17800919 |
T |
|
| Q |
119 |
ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
218 |
Q |
| |
|
||||| | || | | ||| || ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
17800920 |
ttaactgcagaagtcccatcacccttatcaattacttcaatgatgagcttaaagtccttatagtgctcatcaatatctccaccaaagagcttgtaagtgc |
17801019 |
T |
|
| Q |
219 |
ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
||||||||||| || ||||| ||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
17801020 |
ctttcttgtttttttcatcaatttcttcaaccttctcatgacatgtgtgtaccttaccatct |
17801081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 17691604 - 17691865
Alignment:
| Q |
19 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
118 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| || ||| ||||| | | ||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
17691604 |
aagatgagcatcaatgtctcgagtgcatttgctaaggtattccatccaactatttggaggttcaatatcctcattgatcttctcatattcaacagtccat |
17691703 |
T |
|
| Q |
119 |
ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
218 |
Q |
| |
|
|||||||||| | | ||| ||| ||||||||||||||||| ||||||||||||||||||||| || |||||||| ||| ||||||||| |||| | || |
|
|
| T |
17691704 |
ttaacagaagtagtgccatcagccttatcaattacttcaatgatgagcttaaagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacga |
17691803 |
T |
|
| Q |
219 |
ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
|||| ||||| | || ||||| ||||||| | | ||||||||||||| ||| || |||||| |
|
|
| T |
17691804 |
tttttttgttcttttcatcaatttcttcaaaactttcatgacatgtgtataccttaccatct |
17691865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 280
Target Start/End: Original strand, 17717311 - 17717531
Alignment:
| Q |
57 |
agtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattacttc |
156 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||| |||| |||||||| ||||||||| ||| || | ||| || ||||||||||||| |
|
|
| T |
17717311 |
agtccatccagccatttggtgggtcaatatcctcattgatcttctgatattcaacagtccattttgcagctccagtgccatcaccattatcaattacttg |
17717410 |
T |
|
| Q |
157 |
aaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataatctca |
256 |
Q |
| |
|
|| ||| | ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| |||| ||||| |||| ||| ||||| |
|
|
| T |
17717411 |
aatgatcaaattaaagaccttatagtgctcatcaatgtctccaccgaagagcttgaaagtgatttttttgttctgttcatcaa---cttcgatactctca |
17717507 |
T |
|
| Q |
257 |
tgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
|||||||||||||| || |||||| |
|
|
| T |
17717508 |
tgacatgtgtgtaccttaccatct |
17717531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 17868845 - 17869103
Alignment:
| Q |
19 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
118 |
Q |
| |
|
||||||| |||| || ||||||||||||||| || ||| ||||| | |||||||||| ||||||||||||||| | |||||||| |||||| ||||| |
|
|
| T |
17868845 |
aagatgaccatcaatatctctagtgcttttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatactccat |
17868944 |
T |
|
| Q |
119 |
ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
218 |
Q |
| |
|
|||||| || ||||||| ||| ||| | || ||||| | |||||||||||| |||||||||| | ||||||||||||||||| |||||| |||||| |
|
|
| T |
17868945 |
ctaacagcagaacttccatcagccttgttaagcacttctaagatgagcttaaataccttatagttt---tcaatatctccaccaaacagcttgtaagtga |
17869041 |
T |
|
| Q |
219 |
ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
|||| ||||| || | ||||| ||||||| | |||||| ||||||||||| | ||||||| |
|
|
| T |
17869042 |
tttttttgttctgatcatcaacttcttcaacactctcattgcatgtgtgtacctcgccatct |
17869103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 17813254 - 17813515
Alignment:
| Q |
19 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
118 |
Q |
| |
|
|||||||||||| || |||||||| ||| |||| ||||||||| ||||||| |||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
17813254 |
aagatgagcatcaatatctctagtaagtttagcaacgtagtccatccagccattaggagcgtcaatatcctcattgatcttcacatattcaatagtccat |
17813353 |
T |
|
| Q |
119 |
ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
218 |
Q |
| |
|
|||| | |||||| | || |||||||||| ||||| ||||| ||||| ||||||||| ||| ||||||||||||| ||||||||| || ||| |
|
|
| T |
17813354 |
ttaatggcagcactactgtcacttttatcaattatttcaataatgagtttaaaatccttatagttctcaccaatatctccaccgaagagcttgtaactga |
17813453 |
T |
|
| Q |
219 |
ttttcttgttttgtttatcaagatcttcaataatctcatgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
||| || || | || ||||| ||||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
17813454 |
gttttttattcttttcatcaacttcttcaacactctcatgacatgtgtgtaccttgccatct |
17813515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 17851822 - 17852028
Alignment:
| Q |
19 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
118 |
Q |
| |
|
||||||| |||| || ||||||||||||||| || ||||||||| | |||||||||| ||||| || ||||||| | |||||||| |||||||||||| |
|
|
| T |
17851822 |
aagatgaccatcaatatctctagtgcttttgctaaggtagtccatccaaccatttggagtatcaacattctcattgttcttctcataatcaatagtccat |
17851921 |
T |
|
| Q |
119 |
ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
218 |
Q |
| |
|
||| || || | ||||| | ||| ||| ||||| | ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
17851922 |
ctaagagcagaagttccattatccttgataatcacttctaagatgagcttaaagaccttatagttttca---atatctccaccaaaaagcttgaaagtga |
17852018 |
T |
|
| Q |
219 |
ttttcttgtt |
228 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17852019 |
tttttttgtt |
17852028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 280
Target Start/End: Original strand, 17920614 - 17920836
Alignment:
| Q |
55 |
gtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagaagcacttccaccagacttatcaattact |
154 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||||||| | |||||||| |||||||||||| |||||| || ||||||| | | ||| | || ||| |
|
|
| T |
17920614 |
gtagtccatccagccatttggagtctcaacttcctcattgttcttctcataatcaatagtccatctaacagcagaacttccatctgccttgttaagcact |
17920713 |
T |
|
| Q |
155 |
tcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatcttcaataatct |
254 |
Q |
| |
|
|| | |||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||| ||||| || | ||||| ||||||| || |
|
|
| T |
17920714 |
tctaagatgagcttaaagaccttgtagttt---tcaatatctccaccaaacagcttgaaagtgatttttttgttctgctcatcaacttcttcaacctgct |
17920810 |
T |
|
| Q |
255 |
catgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
||| ||||||||||| ||||||||| |
|
|
| T |
17920811 |
cattgcatgtgtgtaccttgccatct |
17920836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 17817443 - 17817649
Alignment:
| Q |
19 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
118 |
Q |
| |
|
||||||| |||| || |||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
17817443 |
aagatgaccatcaatatctctagtgcatttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcataatcaatagtccat |
17817542 |
T |
|
| Q |
119 |
ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
218 |
Q |
| |
|
|||||| || ||||||| | ||| ||| ||||| | ||| | |||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
17817543 |
ctaacagcagaacttccattatccttgataatcacttctaagataacgttaaagaccttatagttt---tcaatatctccaccaaacagcttgaaagtga |
17817639 |
T |
|
| Q |
219 |
ttttcttgtt |
228 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17817640 |
tttttttgtt |
17817649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 17843307 - 17843513
Alignment:
| Q |
19 |
aagatgagcatccatgtctctagtgcttttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccat |
118 |
Q |
| |
|
||||||| |||| || |||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
17843307 |
aagatgaccatcaatatctctagtgcatttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcataaccaatagtccat |
17843406 |
T |
|
| Q |
119 |
ttaacagaagcacttccaccagacttatcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtga |
218 |
Q |
| |
|
|||||| || ||||||| | ||| ||| ||||| | ||| | |||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
17843407 |
ctaacagcagaacttccattatccttgataatcacttctaagataacgttaaagaccttatagttt---tcaatatctccaccaaacagcttgaaagtga |
17843503 |
T |
|
| Q |
219 |
ttttcttgtt |
228 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17843504 |
tttttttgtt |
17843513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 280
Target Start/End: Original strand, 17789075 - 17789209
Alignment:
| Q |
151 |
tacttcaaggatgagcttaaagaccttatagtgttcatcaatatctcc----accaaagagcttgaaagtg-attttcttgttttgtttatcaagatctt |
245 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||| || || ||| ||||| |||| |
|
|
| T |
17789075 |
tacttcaagaatgagcttaaagaccttatagtgctcatcaatatctccaccaaccaaagagcttataagtgtttttttttattcagttcatcaacttctt |
17789174 |
T |
|
| Q |
246 |
caataatctcatgacatgtgtgtactttgccatct |
280 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
17789175 |
caacactctcatgacatgtgtgtaccttgccatct |
17789209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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