View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9534_high_1 (Length: 629)

Name: NF9534_high_1
Description: NF9534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9534_high_1
NF9534_high_1
[»] chr2 (7 HSPs)
chr2 (61-522)||(32743169-32743645)
chr2 (558-620)||(32741927-32741989)
chr2 (17-154)||(653324-653459)
chr2 (347-407)||(40071825-40071884)
chr2 (468-510)||(32723938-32723980)
chr2 (468-510)||(32732393-32732435)
chr2 (163-330)||(40071900-40072065)
[»] chr1 (1 HSPs)
chr1 (19-416)||(51167170-51167558)
[»] chr4 (2 HSPs)
chr4 (46-331)||(43942809-43943089)
chr4 (69-140)||(22073965-22074036)
[»] chr3 (3 HSPs)
chr3 (46-331)||(5884848-5885128)
chr3 (558-618)||(11120227-11120287)
chr3 (555-606)||(12209461-12209512)
[»] scaffold0182 (1 HSPs)
scaffold0182 (46-156)||(10764-10874)
[»] chr6 (4 HSPs)
chr6 (69-203)||(26615867-26616002)
chr6 (69-203)||(26721795-26721930)
chr6 (69-331)||(16856606-16856865)
chr6 (46-87)||(16856569-16856610)
[»] chr5 (1 HSPs)
chr5 (89-154)||(27280853-27280918)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 61 - 522
Target Start/End: Complemental strand, 32743645 - 32743169
Alignment:
Q  61 tatgtcaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactat----tggattgttcctcttcaattttctattattgttttttc 156  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  32743645 tatgtcaatttgtgcagcaatttttggattttgttcatcaccacttccaagcaactatatattggattgttcctcttcaattttctattattgttttttc 32743546  T
Q  157 acaatgttttactcttcatctctttattatccattgatttctatgacgacatgattgggagttaaattactcttagaatgaccaaatatttaaaccctac 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32743545 acaatgttttactcttcatctctttattatccattgatttctat---gacatgattgggagttaaattactcttagaatgaccaaatatttaaaccctgc 32743449  T
Q  257 a-tttttatggacatgatgtttgttagtctattttcctatctttctttcatgtttcttttattcctgaatgtgtatatgtaannnnnnnnnatgtgaatt 355  Q
    | ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||         || ||||||    
T  32743448 attttttatggacttgatgtttgttagtctattttcctgtctttctttcatgtttcttttattccttaatgtgtatatgtaatttttttttatatgaatt 32743349  T
Q  356 aggaaaataggataaaggaggcttttattttcatttttgtttcatcattgcttctcaagaaatt-----------tcaatctcattatgtgtattgtatt 444  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||           |||||||||||||||| ||||||||    
T  32743348 aggaaaataggataaaggagacttttattttcatttttgtttcatcattgctactcaagaaatttcaatctcatgtcaatctcattatgtgcattgtatt 32743249  T
Q  445 --aaaaacttaaaaactaatgaaatgtcaatctcatatcaacctcacttaacaataatattggtagaaaatttaataact 522  Q
      |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  32743248 aaaaaaacttaaaaactaatgaaatgtcaatctcatgtcaacctcacataacaataacattggtagaaaatttaataact 32743169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 558 - 620
Target Start/End: Complemental strand, 32741989 - 32741927
Alignment:
Q  558 ttagaggggttaggtttgcaatatttaattaatttctacacagtgactaaagtacagtataat 620  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  32741989 ttagaggggttaggtttgcaatatttaatgaatttctacacagtgactaaagtatagtataat 32741927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 653459 - 653324
Alignment:
Q  17 atgagactatttgttctatattgaaaaagcattgtgtgtataaatatgtcaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaact 116  Q
    |||||||||||||| |||||||||||| |  |||| | ||||||||||| | ||| |||| |||| ||||| ||||||||||||| |||| |||||||      
T  653459 atgagactatttgtcctatattgaaaagg--ttgtatatataaatatgttattttttgcaccaaagtttgggttttgttcatcacaactttcaagcaata 653362  T
Q  117 attggattgttcctcttcaattttctattattgttttt 154  Q
    ||||||| |  | ||||| ||||| |||||||||||||    
T  653361 attggatggaacatcttcgattttgtattattgttttt 653324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 40071884 - 40071825
Alignment:
Q  347 atgtgaattaggaaaataggataaaggaggcttttattttcatttttgtttcatcattgct 407  Q
    ||||||||||||||||||||||||| || |||| | |||||| |||||||||||| |||||    
T  40071884 atgtgaattaggaaaataggataaatgatgcttcttttttca-ttttgtttcatccttgct 40071825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 32723938 - 32723980
Alignment:
Q  468 gtcaatctcatatcaacctcacttaacaataatattggtagaa 510  Q
    ||||||||||| |||||||| | ||||||||||||||||||||    
T  32723938 gtcaatctcatgtcaacctcgcataacaataatattggtagaa 32723980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 32732393 - 32732435
Alignment:
Q  468 gtcaatctcatatcaacctcacttaacaataatattggtagaa 510  Q
    ||||||||||| |||||||| | ||||||||||||||||||||    
T  32732393 gtcaatctcatgtcaacctcgcataacaataatattggtagaa 32732435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 330
Target Start/End: Complemental strand, 40072065 - 40071900
Alignment:
Q  163 ttttactcttcatctctttattatccattgatttctatgacgacatgattgggagttaaattactcttagaatgaccaaatatttaaaccctacattttt 262  Q
    |||||||||||||||||| |||||   ||| |||||||   ||||| || |||||| || ||||||||||| ||  ||| ||||||| |  ||  ||||     
T  40072065 ttttactcttcatctcttgattattatttggtttctat---gacattatagggagtcaagttactcttagattggtcaagtatttaagcaatattttttc 40071969  T
Q  263 atggacatgatgtttgttagtctattttcctatctttctttcat-gtttcttttattcctgaatgtgta 330  Q
    || || |||||| ||||| ||||||||  |   ||||||||||| ||||||||||||||| ||||||||    
T  40071968 atcgatatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgta 40071900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 51167558 - 51167170
Alignment:
Q  19 gagactatttgttctatattgaaaaagcattgtgtgtataaatatgtcaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactat 118  Q
    |||||||||||| ||| ||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51167558 gagactatttgtcctacattgaaaaagcattgtgtgtataaattcgtgaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactat 51167459  T
Q  119 tggattgttcctcttcaattttctattattgttttttcacaatgttttactcttcatctctttattatccattgatttctatgacgacatgattgggagt 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  51167458 tgaattgttcctcttcaattttctattattgttttttcacaatgttttactcttcatctctttattatccattgatttctat---gacatgattgggagt 51167362  T
Q  219 taaattactcttagaatgaccaaatatttaaaccctaca-tttttatggacatgatgtttgttagtctattttcctatctttctttcatgtttcttttat 317  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  51167361 taaattactcttaaaatgaccaaatatttaaaccctacattttttatgaatatgatgtttgttagtctattttcccgtctttctttcatgtttcttttat 51167262  T
Q  318 tcctgaatgtgtatatgtaannnnnnnnnatgtgaattaggaaaataggataaaggaggcttttattttcatttttgtttcatcattgcttctcaagaa 416  Q
    |||| |||||||| || |           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  51167261 tccttaatgtgta-attt------tttttatgtgaattaggaaaagaggataaaggaggcttctattttcatttttgtttcatcattgttgctcaagaa 51167170  T

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Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 46 - 331
Target Start/End: Original strand, 43942809 - 43943089
Alignment:
Q  46 cattgtgtgtataaatatgtcaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattggattgttcctcttcaattttctatt 145  Q
    |||||||||||||||||||| | |||||||| |||||||||| |||||||||||||||| | |||||||| ||||| | |||| |||||||| || ||||    
T  43942809 cattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatt 43942908  T
Q  146 attgtttttt-cacaatgttttactcttcatctctttattatccattgatttctatgacgacatgattgggagttaaattactcttagaatgaccaaata 244  Q
    | |||||||| |||    ||| |||||||||||||| |||||  |||| ||||| |   | |||||| |||||| |||||||| ||||| ||  ||||||    
T  43942909 actgttttttccactcattttaactcttcatctcttgattattaattg-tttcttt---ggcatgatagggagtcaaattacttttagattggtcaaata 43943004  T
Q  245 tttaaaccctacatttttatggacatgatgtttgttagtctattttcctatctttctttcat-gtttcttttattcctgaatgtgtat 331  Q
    ||||| | |||   |||| |  | |||||||||||||||||||||| | | |||||||| ||  |||||||||||||| |||||||||    
T  43943005 tttaagctcta---ttttttttatatgatgtttgttagtctatttttccaactttcttttatattttcttttattccttaatgtgtat 43943089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 22073965 - 22074036
Alignment:
Q  69 tttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattggattgttcctcttcaatttt 140  Q
    |||| ||| |||||||||| |||||||||||||||||| ||| |||| |||| ||  ||| |||||||||||    
T  22073965 tttgcgcaccaaattttgggttttgttcatcaccactttcaaacaacaattgtataattcatcttcaatttt 22074036  T

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Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 46 - 331
Target Start/End: Complemental strand, 5885128 - 5884848
Alignment:
Q  46 cattgtgtgtataaatatgtcaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattggattgttcctcttcaattttctatt 145  Q
    |||||||||||||||||||| | |||||||| |||||||||| |||||||||||||||| | |||||||| ||||| | |||| |||||||| || ||||    
T  5885128 cattgtgtgtataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtatt 5885029  T
Q  146 attgtttttt-cacaatgttttactcttcatctctttattatccattgatttctatgacgacatgattgggagttaaattactcttagaatgaccaaata 244  Q
    | |||||||| |||    ||| |||||||||||||| |||||  |||| ||||| |   | |||||| |||||| |||||||| ||||| ||  ||||||    
T  5885028 actgttttttccactcattttaactcttcatctcttgattattaattg-tttcttt---ggcatgatagggagtcaaattacttttagattggtcaaata 5884933  T
Q  245 tttaaaccctacatttttatggacatgatgtttgttagtctattttcctatctttctttcat-gtttcttttattcctgaatgtgtat 331  Q
    |||||   ||| |||||| |  | || ||||||||||||||||||| | | |||||||| ||  |||||||||||||| |||||||||    
T  5884932 tttaa--gctatattttt-tttatataatgtttgttagtctatttttccaactttcttttatattttcttttattccttaatgtgtat 5884848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 618
Target Start/End: Complemental strand, 11120287 - 11120227
Alignment:
Q  558 ttagaggggttaggtttgcaatatttaattaatttctacacagtgactaaagtacagtata 618  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  11120287 ttagagggcttaggtttgcaatatttaatgaatttctacacagtgactaaagtatagtata 11120227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 555 - 606
Target Start/End: Complemental strand, 12209512 - 12209461
Alignment:
Q  555 atattagaggggttaggtttgcaatatttaattaatttctacacagtgacta 606  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| ||||||    
T  12209512 atattagaggggttagttttgcaatatttaatgaatttctacacaatgacta 12209461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 10874 - 10764
Alignment:
Q  46 cattgtgtgtataaatatgtcaatttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattggattgttcctcttcaattttctatt 145  Q
    |||||||| ||||||||||| | |||||||| |||||||||| |||||||||||||||| | |||||||| ||||| | |||| |||||||| || | ||    
T  10874 cattgtgtatataaatatgtgattttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtctt 10775  T
Q  146 attgttttttc 156  Q
    | |||||||||    
T  10774 actgttttttc 10764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 26616002 - 26615867
Alignment:
Q  69 tttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattggattgttcctcttcaattttctattattgtt-ttttcacaatgtttta 167  Q
    |||| ||| |||||||||| |||||||| ||||||| | |||  ||| ||||| | | || ||||||||||| |||||||||| |||||||    ||| |    
T  26616002 tttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcattttaa 26615903  T
Q  168 ctcttcatctctttattatccattgatttctatgac 203  Q
    ||||||||||||| |||||  |||| ||||||||||    
T  26615902 ctcttcatctcttgattattaattggtttctatgac 26615867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 26721930 - 26721795
Alignment:
Q  69 tttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattggattgttcctcttcaattttctattattgtt-ttttcacaatgtttta 167  Q
    |||| ||| |||||||||| |||||||| ||||||| | |||  ||| ||||| | | || ||||||||||| |||||||||| |||||||    ||| |    
T  26721930 tttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactcattttaa 26721831  T
Q  168 ctcttcatctctttattatccattgatttctatgac 203  Q
    ||||||||||||| |||||  |||| ||||||||||    
T  26721830 ctcttcatctcttgattattaattggtttctatgac 26721795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 331
Target Start/End: Original strand, 16856606 - 16856865
Alignment:
Q  69 tttgtgcagcaaattttggattttgttcatcaccacttccaagcaactattggattgttcctcttcaattttctatta-ttgttttttcacaatgtttta 167  Q
    |||| ||| |||||||||| |||||||||||||| | | |||||||| ||||| | |||| |||||||| || ||||| || ||||| |||    ||| |    
T  16856606 tttgggcaccaaattttgggttttgttcatcaccgcattcaagcaacaattggttagttcatcttcaatattgtattacttttttttccactcattttaa 16856705  T
Q  168 ctcttcatctctttattatccattgatttctatgacgacatgattgggagttaaattactcttagaatgaccaaatatttaaaccctacatttttatgga 267  Q
    ||||||||||||| |||||  |||| ||||| |   | |||||| ||||||  | ||||| ||||| ||  ||||||||||| | |||  ||||| |  |    
T  16856706 ctcttcatctcttgattattaattg-tttcttt---ggcatgatagggagtccagttacttttagattggtcaaatatttaagctcta-tttttttttta 16856800  T
Q  268 catgatgtttgttagtctattttcctatctttctttcat-gtttcttttattcctgaatgtgtat 331  Q
     |||||||||||||||||||||| |   |||||||| ||  |||||||||||||| |||||||||    
T  16856801 tatgatgtttgttagtctatttttccgactttcttttatattttcttttattccttaatgtgtat 16856865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 16856569 - 16856610
Alignment:
Q  46 cattgtgtgtataaatatgtcaatttgtgcagcaaattttgg 87  Q
    |||||||||||||||||||| | |||||||| ||||||||||    
T  16856569 cattgtgtgtataaatatgtgattttgtgcaccaaattttgg 16856610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 27280918 - 27280853
Alignment:
Q  89 ttttgttcatcaccacttccaagcaactattggattgttcctcttcaattttctattattgttttt 154  Q
    |||||| ||||||||||| |||||||  ||||||| |||| ||||||||||| ||||  |||||||    
T  27280918 ttttgtccatcaccactttcaagcaataattggatagttcatcttcaattttatattgatgttttt 27280853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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