View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9534_low_1 (Length: 795)

Name: NF9534_low_1
Description: NF9534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9534_low_1
NF9534_low_1
[»] chr3 (2 HSPs)
chr3 (340-778)||(34543277-34543715)
chr3 (18-297)||(34541768-34542046)
[»] chr1 (8 HSPs)
chr1 (671-762)||(43467322-43467413)
chr1 (638-773)||(32363673-32363811)
chr1 (671-773)||(7797546-7797648)
chr1 (671-773)||(8055409-8055511)
chr1 (671-773)||(33699489-33699591)
chr1 (671-773)||(46019453-46019555)
chr1 (671-773)||(49573089-49573191)
chr1 (671-773)||(46077014-46077116)
[»] chr8 (2 HSPs)
chr8 (671-773)||(24784831-24784933)
chr8 (671-773)||(35196059-35196161)
[»] chr7 (1 HSPs)
chr7 (671-773)||(6205085-6205187)
[»] chr4 (1 HSPs)
chr4 (671-773)||(54908568-54908670)
[»] scaffold0012 (1 HSPs)
scaffold0012 (671-773)||(109358-109460)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 340 - 778
Target Start/End: Original strand, 34543277 - 34543715
Alignment:
Q  340 tgaataattgaattatcgttgaattaatgtgattatgggaaactctctattaaagtatatcactaatttctatttgtctttaccgtgggaccaaggatca 439  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||| | |    
T  34543277 tgaataattgaattatcgttgaattaatgtgattatgagaaagtctctatgaaagtatatcaccaatttcaatttgtctttaccgtgggaccaaggttga 34543376  T
Q  440 gactattcttcatgtgattagaggctgtacttatacatacaacttaggtatggaagacttgtactttttttattgtataattgacnnnnnnnnn-cgttt 538  Q
    |||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||||||  ||||||||||||||          | |||    
T  34543377 gactattcttcatgtgattagaggctgtacttataca----acttagttatggaagacttgtactttttg-attgtataattgacttttttttttcattt 34543471  T
Q  539 gatcgtaggaattgggtttttcccaacctcaacaagcattggaacatagagccaagacaacttactacttgttggtatata----agtggcggaataaaa 634  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    |||||||||||||||    
T  34543472 gatcgtaggaattgggttttttccaacctcaacaagcattggaacatagagccaagacaacttactatttgttggtatttatgtaagtggcggaataaaa 34543571  T
Q  635 tagtctttgagaaaaaatttcaaagataagataattacaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatgg 734  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  34543572 tagtctttgagaaaaaatttcaaagataagataattataagtatcactcaaaagtttattagtaatattgaagattttactcgtaatgatttttagatgg 34543671  T
Q  735 atacttggcacaccgaaacaatttatattggttggaaatgtctc 778  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  34543672 atacttggcacaccgaaacaatttatattgattggaaatgtctc 34543715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 34541768 - 34542046
Alignment:
Q  18 gacgagaattttatcctccggaggaagaggaggagggggagatggtggtagaggtgaacgttgggaagctacggcgccattttggtcggtcgtagggttt 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34541768 gacgagaattttatcctccggtggaagaggaggagggggagatggtggtagaggtgaacgttgggaagctacggcgccgttttggtcggtcgtagggttt 34541867  T
Q  118 tgctccgtctccattggactaggagaactactactcattttgatgcaactgggtgggtctctgagaacgaaggggggtaagaaaagtggaaaattgattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34541868 tgctccgtctccattggactaggagaactactactcattttgatgcaactgggtgggtctctgagaacgaa-gggggtaagaaaagtggaaaattgattt 34541966  T
Q  218 gaatgagggttttcttttaatttcggcgggaaatcaaaatcacaatgcccatcatttgacttctactgctagttgtactt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34541967 gaatgagggttttcttttaatttcggcgggaaatcaaaatcacaatgcccatcatttgacttatactgctagttgtactt 34542046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 9e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 671 - 762
Target Start/End: Complemental strand, 43467413 - 43467322
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatat 762  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| | || ||  |||||||||||||    
T  43467413 acaagtatcatccaaaagtttactagtaatattgaagattgtactcgtaatcatttttaaatggatactcgacagactaaaacaatttatat 43467322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 638 - 773
Target Start/End: Original strand, 32363673 - 32363811
Alignment:
Q  638 tctttgagaaaaaatttcaaagataagataat--tacaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttt-tagatgg 734  Q
    |||||||| |||| || |||||||  ||||||  ||| ||||||| ||||||||||||  ||||||| || |||| |||||||||| ||||| |||||||    
T  32363673 tctttgaggaaaagttccaaagatcggataatcatacgagtatcatccaaaagtttacccgtaatatcgatgattgtactcgtaattattttgtagatgg 32363772  T
Q  735 atacttggcacaccgaaacaatttatattggttggaaat 773  Q
    ||  | |||||||||||| ||||||||||| ||||||||    
T  32363773 attatgggcacaccgaaataatttatattgattggaaat 32363811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 773
Target Start/End: Original strand, 7797546 - 7797648
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||| ||||||||||||||||| ||||    
T  7797546 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgacacactgaaacaatttatattggctgga 7797645  T
Q  771 aat 773  Q
    |||    
T  7797646 aat 7797648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 8055511 - 8055409
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||| ||||||||||||||||| ||||    
T  8055511 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgtcacactgaaacaatttatattggctgga 8055412  T
Q  771 aat 773  Q
    |||    
T  8055411 aat 8055409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 33699591 - 33699489
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||| ||||||||||||||||| ||||    
T  33699591 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgtcacactgaaacaatttatattggctgga 33699492  T
Q  771 aat 773  Q
    |||    
T  33699491 aat 33699489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 46019555 - 46019453
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||| ||||||||||||||||| ||||    
T  46019555 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgtcacactgaaacaatttatattggctgga 46019456  T
Q  771 aat 773  Q
    |||    
T  46019455 aat 46019453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 49573191 - 49573089
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||  ||||||||||||||||| ||||    
T  49573191 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgtcacattgaaacaatttatattggctgga 49573092  T
Q  771 aat 773  Q
    |||    
T  49573091 aat 49573089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 671 - 773
Target Start/End: Original strand, 46077014 - 46077116
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| |  ||| ||||| | ||||||  | | ||||  ||||||||||||||||  ||||    
T  46077014 acaagtatcatccaaaagtttactagtgatattgaagattgtacactcaatcattttcaaatggatcttcgacacattgaaacaatttatattgactgga 46077113  T
Q  771 aat 773  Q
    |||    
T  46077114 aat 46077116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 773
Target Start/End: Original strand, 24784831 - 24784933
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||| ||||||||||||||||| ||||    
T  24784831 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgtcacactgaaacaatttatattggctgga 24784930  T
Q  771 aat 773  Q
    |||    
T  24784931 aat 24784933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 35196161 - 35196059
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||| ||||||||||||||||| ||||    
T  35196161 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgtcacactgaaacaatttatattggctgga 35196062  T
Q  771 aat 773  Q
    |||    
T  35196061 aat 35196059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 773
Target Start/End: Original strand, 6205085 - 6205187
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||| ||||||||||||||||| ||||    
T  6205085 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgtcacactgaaacaatttatattggctgga 6205184  T
Q  771 aat 773  Q
    |||    
T  6205185 aat 6205187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 54908670 - 54908568
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| ||||| | ||||||  | | ||||| ||||||||||||||||| ||||    
T  54908670 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcattttcaaatggatcttcgacacactgaaacaatttatattggctgga 54908571  T
Q  771 aat 773  Q
    |||    
T  54908570 aat 54908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 109460 - 109358
Alignment:
Q  671 acaagtatcacccaaaagtttactagtaatattgaagattttactcgtaataatttttagatggatacttggcacaccgaaacaatttatattggttgga 770  Q
    |||||||||| |||||||||||||||| |||||||||||| ||| | |||| || || | ||||||  | | ||||  ||||||||||||||||| ||||    
T  109460 acaagtatcatccaaaagtttactagtgatattgaagattgtacacttaatcatattcaaatggatcttcgacacattgaaacaatttatattggctgga 109361  T
Q  771 aat 773  Q
    |||    
T  109360 aat 109358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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