View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9534_low_11 (Length: 250)
Name: NF9534_low_11
Description: NF9534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9534_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 34120726 - 34120509
Alignment:
| Q |
15 |
cacagaccaaaatcttccataatcattgctgaaggcatccctctaattgatctctctcccataaactaccaagatgatgaaaccaactcactttccatcc |
114 |
Q |
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| T |
34120726 |
cacagaccaaaatcttccataatcattgctgaaagcatccctctaattgatctctctcccataaactaccaagatgatgaaaccaactcactttccatcg |
34120627 |
T |
|
| Q |
115 |
aaaacttggtcaaagaaattggtcaagcatgtaaagaatggggtttctttcaagttattaatcacaaagtgcctttggataaacgtgagagaattgaaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34120626 |
aaaacttggtcaaagaaattggtcaagcatgtaaagaatggggtttctttcaagttattaatcacaaagtgcctttggataaacgtgagagaattgaaga |
34120527 |
T |
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| Q |
215 |
atctgcaaacaaattttt |
232 |
Q |
| |
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|||||||||||||||||| |
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| T |
34120526 |
atctgcaaacaaattttt |
34120509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 32717293 - 32717342
Alignment:
| Q |
15 |
cacagaccaaaatcttccataatcattgctgaaggcatccctctaattga |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717293 |
cacagaccaaaatcttccataatcattgctgaaggcatccctctaattga |
32717342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 10638318 - 10638269
Alignment:
| Q |
15 |
cacagaccaaaatcttccataatcattgctgaaggcatccctctaattga |
64 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10638318 |
cacataccaaaatcttccataatcattgctgaaggcatccctctaattga |
10638269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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