View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9534_low_2 (Length: 644)
Name: NF9534_low_2
Description: NF9534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9534_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 3e-53; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 30409818 - 30409691
Alignment:
| Q |
166 |
aagacctaaatacttctttggttcccttaactttaaaacttatcaatttgatcctacttgggtcttgttaacaaaacttgtgagctaatttcattgcttc |
265 |
Q |
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| T |
30409818 |
aagacctaaatacttttttggttcccttaactttaaaacttatcaatttgatcctacttgggtcttgttaacaaaacttgtgagctaatttcattgcttc |
30409719 |
T |
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| Q |
266 |
aatcgatgagctagtattgtccttctatacga |
297 |
Q |
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| T |
30409718 |
actcgatg----agtattgtccttctatacga |
30409691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 555
Target Start/End: Complemental strand, 30404047 - 30403927
Alignment:
| Q |
435 |
attggaccccttcttgtctcttgttaattttcagtgcaacaaagtaatataattttatcaatttgaaacacataagtttgcataagcaacgccttaaaat |
534 |
Q |
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| T |
30404047 |
attggaccccttcttgtctctttttaattttcagtgcaacaaagtaatagatttttaccaatttgaaaaacataagtttgcattagcaaggccttgaaat |
30403948 |
T |
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| Q |
535 |
tatagagaagaaaagcaaatg |
555 |
Q |
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| T |
30403947 |
tatagagaagaaaagcaaatg |
30403927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 358 - 438
Target Start/End: Complemental strand, 30409685 - 30409605
Alignment:
| Q |
358 |
aaattacgatccaaaaatggcctgttgttatctaatgcatgtttgcctgacataatttccaagagaacaaccccaaaattg |
438 |
Q |
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| T |
30409685 |
aaattacgatccaaaaatggcctgttgttatctaatgcatgtttgcctgacataatttccaagagaacaaccccaaaattg |
30409605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 246 - 438
Target Start/End: Complemental strand, 30412282 - 30412094
Alignment:
| Q |
246 |
tgagctaatttcattgcttcaatcgatgagctagtattgtccttctatacgagcatccatgacttgagatattttgcgtttgctggtgagtaattgtttg |
345 |
Q |
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| T |
30412282 |
tgagctaatttcattgcatcacgcgatgag----tattcaccttctatacgaacatccataacttgagagattttatgtttgttgttgagtaatggcttg |
30412187 |
T |
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| Q |
346 |
gcccatgcaactaaattacgatccaaaaatggcctgttgttatctaatgcatgtttgcctgacataatttccaagagaacaaccccaaaattg |
438 |
Q |
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| T |
30412186 |
gcccattcaaccaaattttgttcctgaagcggcatgtttttatccactgcacgtttgcctgacataatttccaggagaacaaccccaaaattg |
30412094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 30409975 - 30409922
Alignment:
| Q |
9 |
aagcagagactaaaattgatattagagtgtttagaggaccaataattaaagaaa |
62 |
Q |
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| T |
30409975 |
aagcagagactaaaattgatattagagtgtttagaggaccaataattaaagaaa |
30409922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 278 - 431
Target Start/End: Complemental strand, 30423408 - 30423255
Alignment:
| Q |
278 |
agtattgtccttctatacgagcatccatgacttgagatattttgcgtttgctggtgagtaattgtttggcccatgcaactaaattacgatccaaaaatgg |
377 |
Q |
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||||||| |||||||||||||||||||| |||||||| || || |||||||| |||||||| | ||||||||||||||||||| | | || | | || |
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| T |
30423408 |
agtattggccttctatacgagcatccataacttgagaaatcttacgtttgctcatgagtaatggcttggcccatgcaactaaatcatgctctccagacgg |
30423309 |
T |
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| Q |
378 |
cctgttgttatctaatgcatgtttgcctgacataatttccaagagaacaacccc |
431 |
Q |
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| T |
30423308 |
tcggtttttatccaatacacgcttgcctgacataatttctaggagaacaacccc |
30423255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 30413149 - 30413098
Alignment:
| Q |
504 |
acataagtttgcataagcaacgccttaaaattatagagaagaaaagcaaatg |
555 |
Q |
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| T |
30413149 |
acataagtttgtataagcaacgcattgaaattatagagaagaaaagcaaatg |
30413098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 627
Target Start/End: Complemental strand, 30413100 - 30413057
Alignment:
| Q |
583 |
atgtgaacgtgtgaaaactaaaaacaattatttttgtcctggctg |
627 |
Q |
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| T |
30413100 |
atgtgaacgtgt-aaaactaaaaacaattatttttgtcctggctg |
30413057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 30405557 - 30405497
Alignment:
| Q |
375 |
tggcctgttgttatctaatgcatgtttgcctgacataatttccaagagaacaaccccaaaa |
435 |
Q |
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| T |
30405557 |
tggcctgttataatccaatgcacgttttcccgacataatttccaggagaacaaccccaaaa |
30405497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 470
Target Start/End: Complemental strand, 30410610 - 30410575
Alignment:
| Q |
435 |
attggaccccttcttgtctcttgttaattttcagtg |
470 |
Q |
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| T |
30410610 |
attggacctcttcttgtctcttgttaattttcagtg |
30410575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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