View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9534_low_5 (Length: 481)
Name: NF9534_low_5
Description: NF9534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9534_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Original strand, 7766878 - 7767334
Alignment:
| Q |
11 |
agcagagaacataagagagaatgctaccaagacatttgtcacccttcatcaccagggtgagcaaattactaggactcaccatgtcaccgcggacattgat |
110 |
Q |
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| T |
7766878 |
agcagagaacataagagagaatgctaccaagacatttgtcacccttcatcaccagggtgagcaaattactaggactcaccatgtcgccgcggacattgat |
7766977 |
T |
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| Q |
111 |
ggacatttaagtcgggtataatcttcttaatatacannnnnnnncaagtgcttctatatggtgcttcttcatgttgctttacctttatgaaaaatattat |
210 |
Q |
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| T |
7766978 |
ggacatttaagtcgggtataatcttcttaatatacattttttttcaagtgcttctatacggtgcttcttcatgttgctttacctttatgaaaaatattat |
7767077 |
T |
|
| Q |
211 |
a----tgttgctcttttgtgatgaaaccctaataagtattttaaacaataacttctcttattataagttgaaattagcttttgcatatctatgttttcac |
306 |
Q |
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| T |
7767078 |
atatatgttgctcttttgtgatgaaaccctaataagtattttaaacaataacttctcttattataagttgaaattagcttttgcatatctatgttttcac |
7767177 |
T |
|
| Q |
307 |
ttgcttccagggagaaaagcttttgagaagtcttggtggcctcttctccaaaacttggaaaccaaagaagacacgtaaaattacaggcccagttattttt |
406 |
Q |
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| T |
7767178 |
ttgcttccagggagaaaagcttttgagaagtcttggtggcctcttctccaaaacttggaaaccaaagaagacacgtaaaattacaggcccagttattttt |
7767277 |
T |
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| Q |
407 |
ggaggttagtaatttctttgcaagtgttttcttttctatattattccgggttgtatc |
463 |
Q |
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| T |
7767278 |
ggaggttagtaatttctttgcaagtgttttcttttctatatcattccgggttgtatc |
7767334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 45392641 - 45392506
Alignment:
| Q |
11 |
agcagagaacataagagagaatgctaccaagacatttgtcacccttcatcaccagggtgagcaaattactaggactcaccatgtcaccgcggacattgat |
110 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || | ||||||||| |
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| T |
45392641 |
agcagagaacataagagaggatgctgccaagacattggtcacccttcatcaccagggtgagcaaattactaggagtcaccatgtcgccaccgacattgat |
45392542 |
T |
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| Q |
111 |
ggacatttaagtcgggtataatcttcttaatataca |
146 |
Q |
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| T |
45392541 |
cgagatttaagtcgggtataatcttcttaatataca |
45392506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 308 - 444
Target Start/End: Complemental strand, 45392186 - 45392050
Alignment:
| Q |
308 |
tgcttccagggagaaaagcttttgagaagtcttggtggcctcttctccaaaacttggaaaccaaagaagacacgtaaaattacaggcccagttatttttg |
407 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
45392186 |
tgcttccagggagaaaagcttttgggaagccttggtggcctcttctccaaaacatggaaaccaaagaagacacgtacaataacaggccctgttatttttg |
45392087 |
T |
|
| Q |
408 |
gaggttagtaatttctttgcaagtgttttcttttcta |
444 |
Q |
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| T |
45392086 |
gaggttaatattttctctccatatcttttcttttcta |
45392050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 7216218 - 7216155
Alignment:
| Q |
315 |
agggagaaaagcttttgagaagtcttggtggcctcttctccaaaacttggaaaccaaagaagac |
378 |
Q |
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|||||||||| || ||| |||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
7216218 |
agggagaaaaactattgggaagtcttggtggcatattctccaaaacatggaaaccaaagaagac |
7216155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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