View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9534_low_6 (Length: 471)
Name: NF9534_low_6
Description: NF9534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9534_low_6 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 417271 - 416839
Alignment:
| Q |
18 |
ggtttgtccaatttttacggccgtgatggattcctccaatgctctcaaggtctaagttcagcgtttcaatgaaaaaattacaaggactggacccaaactg |
117 |
Q |
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| T |
417271 |
ggtttgtccaatttttacggccgtgatggattcctccaatgctctcaaggtcgaatttcagcgtttcaatgaaaaaattacaaggactggacccaaactg |
417172 |
T |
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| Q |
118 |
caatagtgttactgaataacaagggaaaatatggatttttcacaggttttctgaacctagctcaagtatattctacgtcaggtgtttgagcagggaatat |
217 |
Q |
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| T |
417171 |
caatattgttactgaataacaagggaaaatatggatttttcacaggttttctgaacctagctcaagtatattctacgtcaggtgtttgagcagggaatat |
417072 |
T |
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| Q |
218 |
cactttgaaggatataacataagtccggaactgtctctgccttgagcctaattgatattttaacaaaggagagtcctcgaagacaaaattatcctgggaa |
317 |
Q |
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| T |
417071 |
cactttgaaggatataacataagtccgggactgtctctgccttgagcctaattgatatttcaacaaaggagagtccacgaagacaaaattatcctgggaa |
416972 |
T |
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| Q |
318 |
tgcaaaagaataaaaacattataaggaatataaatatttatgcaaggatgaacattattgttataaaaggattatatgatcttcatctccattatttcag |
417 |
Q |
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| T |
416971 |
tgcaaaagaatgaaaacattataaggaatataaatatttatgcaaggatgaacattattgttataaaaggattatatgatcttcatctccattatttcag |
416872 |
T |
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| Q |
418 |
aattaaatcttacatgccattacaggtaaatta |
450 |
Q |
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| T |
416871 |
aattaaatcttacatgtcattacaggtaaatta |
416839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 407579 - 407510
Alignment:
| Q |
18 |
ggtttgtccaatttttacggccgtgatggattcctccaatgctctcaaggtctaagttcagcgtttcaat |
87 |
Q |
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| T |
407579 |
ggtttgtccaatttttatggtcgtgacggattcctccaatgctctcaaggtcgaagttcagtgtttcaat |
407510 |
T |
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