View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9535_2 (Length: 512)

Name: NF9535_2
Description: NF9535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9535_2
NF9535_2
[»] chr8 (14 HSPs)
chr8 (180-503)||(38300546-38300869)
chr8 (180-503)||(38309193-38309516)
chr8 (180-503)||(38321291-38321614)
chr8 (180-503)||(38317196-38317519)
chr8 (195-503)||(38326041-38326349)
chr8 (1-127)||(38300922-38301048)
chr8 (216-488)||(38313802-38314072)
chr8 (180-503)||(38306455-38306766)
chr8 (1-127)||(38317575-38317701)
chr8 (1-127)||(38309564-38309690)
chr8 (2-121)||(38314171-38314290)
chr8 (1-111)||(38306838-38306948)
chr8 (1-120)||(38326389-38326502)
chr8 (1-113)||(38321684-38321790)
[»] chr4 (2 HSPs)
chr4 (180-503)||(38849817-38850149)
chr4 (1-122)||(38849635-38849756)


Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 180 - 503
Target Start/End: Complemental strand, 38300869 - 38300546
Alignment:
Q  180 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38300869 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 38300770  T
Q  280 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38300769 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc 38300670  T
Q  380 caatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttca 479  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38300669 caatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttca 38300570  T
Q  480 gccattctctttatatcttcatct 503  Q
    ||||||||||||||||||||||||    
T  38300569 gccattctctttatatcttcatct 38300546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 180 - 503
Target Start/End: Complemental strand, 38309516 - 38309193
Alignment:
Q  180 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 279  Q
    ||||||||||||||||| | ||||||||| |||||||||| ||| |||||||  ||||||||||||||||| ||  |||||||||||| ||||| |||||    
T  38309516 cttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagtac 38309417  T
Q  280 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc 379  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |  |||||||||| ||||||||||||||||| |||    
T  38309416 ttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataagc 38309317  T
Q  380 caatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttca 479  Q
    |||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  38309316 caatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaacttggtcaacatcctttca 38309217  T
Q  480 gccattctctttatatcttcatct 503  Q
     |||||||||||||||||||||||    
T  38309216 accattctctttatatcttcatct 38309193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 180 - 503
Target Start/End: Complemental strand, 38321614 - 38321291
Alignment:
Q  180 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 279  Q
    ||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | ||||| | |||    
T  38321614 cttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaatac 38321515  T
Q  280 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc 379  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  |  ||  ||||||||||||||||||||| |||    
T  38321514 ttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagc 38321415  T
Q  380 caatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttca 479  Q
    |||||| |||| ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  38321414 caatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttca 38321315  T
Q  480 gccattctctttatatcttcatct 503  Q
    ||||||||||||||| ||||||||    
T  38321314 gccattctctttatagcttcatct 38321291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 180 - 503
Target Start/End: Complemental strand, 38317519 - 38317196
Alignment:
Q  180 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 279  Q
    |||||||  |||||||||| ||||||||| ||||| |||| ||| ||||||||| ||||||||||||||||  || ||||||  | || ||||| ||| |    
T  38317519 cttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggccagaagaagtgc 38317420  T
Q  280 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc 379  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||   || |  ||||||| |||||||||||||||||||| |||    
T  38317419 ttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttgagtaacaataagc 38317320  T
Q  380 caatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttca 479  Q
    ||| || |||| ||| |||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||    
T  38317319 caacgtcgaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcccaatatttgtcaaactcgctcatcatcctttca 38317220  T
Q  480 gccattctctttatatcttcatct 503  Q
    ||||||||||||||| ||| ||||    
T  38317219 gccattctctttataactttatct 38317196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 195 - 503
Target Start/End: Complemental strand, 38326349 - 38326041
Alignment:
Q  195 ccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatact 294  Q
    |||| ||||||||| ||  | |||| ||| |||| |||| | ||||||||| |||| | | ||||||||| || ||||| ||||| || |||||||||||    
T  38326349 ccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaagaagtacgttggctagaatact 38326250  T
Q  295 tgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagccaatgttgaaagctt 394  Q
    || |||||||||||||||||||  || ||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||  ||    
T  38326249 tgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaataagccaatgttgaaaattt 38326150  T
Q  395 aatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcagccattctctttata 494  Q
    ||||| ||| |||||||||||||||| ||||||||||||||| ||||||| |||| |||| ||||||||| ||| |||||||||||||||||||||||||    
T  38326149 aatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcattccaaaatttgtcaaacttgctcatcatcctttcagccattctctttata 38326050  T
Q  495 tcttcatct 503  Q
     ||||||||    
T  38326049 acttcatct 38326041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 38301048 - 38300922
Alignment:
Q  1 gaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtgcactttcaattcctattatatttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38301048 gaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcagtaacaagctgttgatggtgcactttcaattcctattatatttc 38300949  T
Q  101 acacgtgaaaagggaagcaatggggtt 127  Q
    |||||||||||||||||||||||||||    
T  38300948 acacgtgaaaagggaagcaatggggtt 38300922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 216 - 488
Target Start/End: Complemental strand, 38314072 - 38313802
Alignment:
Q  216 ttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtacttttgctagaatacttgtcaaatagcatgtacaact 315  Q
    |||| ||| ||||||||| ||||||||||| |||  ||| || ||||||| | ||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  38314072 ttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctagaagaagtacttttgctagagtacttggcaaatagcatgtacaact 38313973  T
Q  316 tgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagccaatgttgaaagcttaatccttggatcaagaaccgc 415  Q
    |  ||||||||| ||||||||||| |||||  ||||||| ||| |||||||||||||||  ||||||| ||||||  || |||| ||| |||||||| ||    
T  38313972 ttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaacaagcagccaatcttgaaaatttcatccgtgggtcaagaactgc 38313873  T
Q  416 tcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcagccattctc 488  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||  || ||| |||| ||||||||||    
T  38313872 tcccattgcaagaacaacac--tactcatcccaatatttcttaaacttgcccatcatacttttagccattctc 38313802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 180 - 503
Target Start/End: Complemental strand, 38306766 - 38306455
Alignment:
Q  180 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagtac 279  Q
    ||||||||||||||||| | ||||||||| |   | |||| ||| ||||||||| ||||||||||| |||| | | || ||||||  | ||||| |||||    
T  38306766 cttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagtac 38306667  T
Q  280 ttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattagc 379  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||  ||||||| ||| |||||||||||||||| |||    
T  38306666 ttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttgagtaacaatcagc 38306567  T
Q  380 caatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttca 479  Q
    |||  |||| |  || |||| ||| |            ||||||||||||||||||||| ||||||||||||||||| |||||||  || |||||||| |    
T  38306566 caaccttgagaatttcatccgtgggt------------ccattgcaagaacaacactatgctcatcccaatatttcttaaacttgcccatcatcctttta 38306479  T
Q  480 gccattctctttatatcttcatct 503  Q
    |||||||||  |||| ||||||||    
T  38306478 gccattctcgctataacttcatct 38306455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 38317701 - 38317575
Alignment:
Q  1 gaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtgcactttcaattcctattatatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||  | |||||||||||||||||||||||||||||    
T  38317701 gaaaatccaaatttgactcatctaagtaaacatcaagttgagattttctagtttcagtaacaagctgccgttggtgcactttcaattcctattatatttc 38317602  T
Q  101 acacgtgaaaagggaagcaatggggtt 127  Q
    ||||||||||||| |||||||| ||||    
T  38317601 acacgtgaaaaggaaagcaatgaggtt 38317575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 38309690 - 38309564
Alignment:
Q  1 gaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtgcactttcaattcctattatatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||||||  | |||||||||||||||||||||||||| ||    
T  38309690 gaaaatccaaatttgactcatctaagtaaacatcaagttgagatttttcagtttcagtaacaagctgccgttggtgcactttcaattcctattatatctc 38309591  T
Q  101 acacgtgaaaagggaagcaatggggtt 127  Q
    ||||||||||||| |||||||| ||||    
T  38309590 acacgtgaaaaggaaagcaatgaggtt 38309564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 38314290 - 38314171
Alignment:
Q  2 aaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtgcactttcaattcctattatatttca 101  Q
    ||||| ||||| |||||| || |||||||||||||||||||| || ||||||| | ||||||||||||||||||||| ||||||||| ||||||||||||    
T  38314290 aaaattcaaatctgactcgtcaaagtaaacatcaagttcagactttccagttttagtaacaagctgttgatggtgcattttcaattcatattatatttca 38314191  T
Q  102 cacgtgaaaagggaagcaat 121  Q
    || || |||| | |||||||    
T  38314190 caagttaaaaagaaagcaat 38314171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 38306948 - 38306838
Alignment:
Q  1 gaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtgcactttcaattcctattatatttc 100  Q
    ||||| |||||| |||||||||||||||||||||||||| ||| ||  |||||||  |||||||||||||||| | || |||||||||||||| ||||||    
T  38306948 gaaaacccaaatctgactcatctaagtaaacatcaagttgagacttttcagtttcggtaacaagctgttgatgtttcattttcaattcctattgtatttc 38306849  T
Q  101 acacgtgaaaa 111  Q
    ||| |||||||    
T  38306848 acaagtgaaaa 38306838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 38326502 - 38326389
Alignment:
Q  1 gaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtgcactttcaattcctattatatttc 100  Q
    ||||||||||| |||| ||||| |||||||||||||||| ||| || |||||      |||||| ||||||||||||| ||||||||||||||| |||||    
T  38326502 gaaaatccaaacttgattcatccaagtaaacatcaagttgagactttccagt------aacaagttgttgatggtgcattttcaattcctattacatttc 38326409  T
Q  101 acacgtgaaaagggaagcaa 120  Q
    ||| ||||||||| ||||||    
T  38326408 acaagtgaaaaggaaagcaa 38326389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38321790 - 38321684
Alignment:
Q  1 gaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtgcactttcaattcctattatatttc 100  Q
    |||||||||||||||||||| ||||||||| ||||||||  ||||| |||||      ||||||||| | ||||||   |||||||||||||||||||||    
T  38321790 gaaaatccaaatttgactcagctaagtaaatatcaagttgggattttccagt------aacaagctgctcatggtgagttttcaattcctattatatttc 38321697  T
Q  101 acacgtgaaaagg 113  Q
    ||| |||||||||    
T  38321696 acaagtgaaaagg 38321684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 180 - 503
Target Start/End: Original strand, 38849817 - 38850149
Alignment:
Q  180 cttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctgg---------ataattctttgcacgcaag 270  Q
    ||||||||||||||||| | ||||||||| ||||| |||| ||| ||||||||||||||||||||||||||          ||| ||||||| || | ||    
T  38849817 cttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttctttgaaccccag 38849916  T
Q  271 aaggagtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagta 370  Q
     || ||| || |||| ||||| ||| |||||||||||| ||||||| ||||||||||| || | |||||||||||  ||||||||||| |||||||| ||    
T  38849917 cagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatccagttttgaata 38850016  T
Q  371 acaattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagc 470  Q
    ||||| |||||| |||| || ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  38850017 acaataagccaaggttgtaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatc 38850116  T
Q  471 atcctttcagccattctctttatatcttcatct 503  Q
    ||||||||||||||| |||||||||||||||||    
T  38850117 atcctttcagccattttctttatatcttcatct 38850149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 38849635 - 38849756
Alignment:
Q  1 gaaaatccaaatttgactcatctaagtaaacatcaagttcagatttcccagtttcattaacaagctgttgatggtgcactttcaattcctattatatttc 100  Q
    |||||||||||  |||||||||||||||||||||||||| ||| || |||||||   |||||||||| |||||||||||||||||||||||||| |||||    
T  38849635 gaaaatccaaaactgactcatctaagtaaacatcaagttgagactttccagttttggtaacaagctgctgatggtgcactttcaattcctattacatttc 38849734  T
Q  101 acacgtgaaaagggaagcaatg 122  Q
    ||| ||||||||| || |||||    
T  38849735 acaagtgaaaaggaaaccaatg 38849756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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