View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9535_4 (Length: 334)
Name: NF9535_4
Description: NF9535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9535_4 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 131 - 321
Target Start/End: Complemental strand, 9557917 - 9557727
Alignment:
| Q |
131 |
tcaataactccatatccaaattcgcgaacatgattgtgttcgcagtaccctcgtgcctagtttacaatagcctaaatcacctcataccataaaccataag |
230 |
Q |
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| T |
9557917 |
tcaataactccatatccaaattcgcgaacatgattgtgttcgcagtaccctcgtgcctagtttacaatagcctaaatcacctcataccataaaccataag |
9557818 |
T |
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| Q |
231 |
ttcacaactcaattttcctctaagtgacacacgaacttcatacaatctatgacacctaatctaacactaacaaattcattatttaccgttc |
321 |
Q |
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| T |
9557817 |
ttcacaactcaattttcctcgaactgacacacgaacttcatacaatctatgacacctaatctaacactaacaaattcattatttaccgttc |
9557727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9558002 - 9557916
Alignment:
| Q |
1 |
catatacgagtatggcgccattgcaccgccatcgtttacnnnnnnnttggccatgacggaaagccaaaaatccaccattgcaatatc |
87 |
Q |
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| T |
9558002 |
catatacgagtatggcgccattgcaccgccatcgtttacaaaaaaattggccatgaaggaaagccaaaaatccgccattgcaatatc |
9557916 |
T |
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