View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9535_5 (Length: 329)
Name: NF9535_5
Description: NF9535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9535_5 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 38299970 - 38299674
Alignment:
| Q |
1 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299970 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaa |
38299871 |
T |
|
| Q |
101 |
tccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagcca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299870 |
tccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagcca |
38299771 |
T |
|
| Q |
201 |
gctgttgtttaatattgagtttctcttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaatatcttgacataacca |
297 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38299770 |
gctgttgtttaatattgagtttctcttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaatatcttgacttaacca |
38299674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38305889 - 38305663
Alignment:
| Q |
1 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaa |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||| |||||| || |||||||||||||||||||||||| |
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| T |
38305889 |
tattccccaatcactcaaaaactcaaccattctctcacacatctcggctacagtgggtaaaacaacacagaagttgagaaccttactatttaacttccaa |
38305790 |
T |
|
| Q |
101 |
tccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagcca |
200 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
38305789 |
tccgcgtcaacaaaatgcgcagtcaaacagatataagtctcagcagtgttagattcccacaaatcaaaagttaaagatatcctattaggaatggtagcca |
38305690 |
T |
|
| Q |
201 |
gctgttgtttaatattgagtttctctt |
227 |
Q |
| |
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| |||||||| || |||||||||| |
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| T |
38305689 |
attcttgtttaagcttcagtttctctt |
38305663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38320715 - 38320475
Alignment:
| Q |
1 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaa |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||| |||| |||||| | ||||||||||| ||||| |||||| |
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|
| T |
38320715 |
tattccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaa |
38320616 |
T |
|
| Q |
101 |
tccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagcca |
200 |
Q |
| |
|
| ||||||| ||||||||||||||||||| ||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
38320615 |
ttcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagcca |
38320516 |
T |
|
| Q |
201 |
gctgttgtttaatattgagtttctcttcagtgtacaaatcc |
241 |
Q |
| |
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| ||||||| ||||||||| ||| |||||||||||| |
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| T |
38320515 |
aatcctgtttaagcttgagtttcgctttcgtgtacaaatcc |
38320475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 38313211 - 38313023
Alignment:
| Q |
1 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagt----gggtaaaacaagacagaaattaagaaccttactatttaactt |
96 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| | |||| |||| ||||||||||||| || ||||| |||||||||||||| |
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|
| T |
38313211 |
tattccccaatcactcaaaaactcaaccattctctcacacatctcagctccagtaggagggt-aaacaagacagaagttgagaactttactatttaactt |
38313113 |
T |
|
| Q |
97 |
ccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctatt |
186 |
Q |
| |
|
||||| ||| ||||| |||||||| |||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38313112 |
ccaattcgcatcaacgaaatgagcagtcaaacaaatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatt |
38313023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 60 - 239
Target Start/End: Complemental strand, 38316558 - 38316379
Alignment:
| Q |
60 |
aaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattccca |
159 |
Q |
| |
|
||||||||| || || |||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
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|
| T |
38316558 |
aaacaagacgaaagttgagaaccttactattcaacttccaattcgcgtcaacaaaatgagctgtcaaacaaatataagtctcagtggtgttagattccca |
38316459 |
T |
|
| Q |
160 |
cagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
239 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||| | |||||||| || |||||||||| |||||||||| |
|
|
| T |
38316458 |
caaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaat |
38316379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 38325465 - 38325251
Alignment:
| Q |
1 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtg---ggtaaaacaagacagaaattaagaaccttactatttaacttc |
97 |
Q |
| |
|
|||||||||||||||||| || |||| |||||| |||||||||||| ||||| || | ||| ||||||||| |||||||||||||||| |||| |
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|
| T |
38325465 |
tattccccaatcattcaacaattcaatcattctttcacacatctcaccaccagtgtcagggtagacactacagaaattgagaaccttactatttaccttc |
38325366 |
T |
|
| Q |
98 |
caatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtag |
197 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| || |||| | || |||| ||||||||||| ||||||||||||||||| |||||||||||| |||| |
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|
| T |
38325365 |
caattcgcgtcaacaaaatgagcggtcagacaaatgtaaggcatagtagtgcaagattcccacaaatcaaaagttaaagataccctattaggaatggtag |
38325266 |
T |
|
| Q |
198 |
ccagctgttgtttaa |
212 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
38325265 |
ccaattgttgtttaa |
38325251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 38308564 - 38308385
Alignment:
| Q |
59 |
aaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattccc |
158 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||| ||| |||||||| |
|
|
| T |
38308564 |
aaaacaagacagaaattgaaaagcttactatttaacttccaatccgcgccaacaaaatgagcggataaacaaatataagtgccagtagtacaagattccc |
38308465 |
T |
|
| Q |
159 |
acagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaa |
238 |
Q |
| |
|
||| ||||| |||||||||||| ||| |||||| |||||||| |||||||| | || |||||||||| ||||||||| |
|
|
| T |
38308464 |
acaactcaaaggttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 38850725 - 38850966
Alignment:
| Q |
1 |
tattccccaatcattcaagaactcaaccattctctcacacatctcagatacagtgggta---aaacaagacagaaattaagaaccttactatttaacttc |
97 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||| ||| || ||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
38850725 |
tattccccaatcattcaacaactcaaccattctctcacaaatctccccactagtaggaggataaacaagacggaaattgataaccttactatttaacttc |
38850824 |
T |
|
| Q |
98 |
caatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtag |
197 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
38850825 |
caattcgcgtcaacaaaatgagcagtcaaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtag |
38850924 |
T |
|
| Q |
198 |
ccagctgttgtttaatattgagtttctcttcagtgtacaaat |
239 |
Q |
| |
|
| |||||||||| || ||||||||| |||||||||| |
|
|
| T |
38850925 |
ttaattgttgtttaagcttaggtttctctttcgtgtacaaat |
38850966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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