View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9535_6 (Length: 306)
Name: NF9535_6
Description: NF9535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9535_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 9557407 - 9557699
Alignment:
| Q |
14 |
agatgaggccggttttcgctggaaatttggagtacgatactcgtcaatcagaacttgaacgcttgttctcaaagtatggaagaattgaacgtgttgatat |
113 |
Q |
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| T |
9557407 |
agatgaggccggttttcgctggaaatttggagtacgatactcgtcaatcagaacttgaacgcttgttctcaaagtatggaagaattgaacgtgttgatat |
9557506 |
T |
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| Q |
114 |
gaaatctggtataatctcgtctttctcaattcacatgctcaaaatttacttgtttaattgctagtttttgttcttgaagattttagtttcattttgttga |
213 |
Q |
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| T |
9557507 |
gaaatctggtataatctcgtctttctcaattcacatgctcaaaatttacttgtttaattgctagtttttgttcttgaagattttagtttcattttgttga |
9557606 |
T |
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| Q |
214 |
tcaagtttcaagattatagcttaaccctttaacggtttcctggttaatattataagggggcattctgggttttaatcaagtactaagattata |
306 |
Q |
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| T |
9557607 |
tcaagtttcaagattatagcttaaccctttaacggtttcctggttaatattataatggggcattctgggttttaatcaagtactaagattata |
9557699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 38174207 - 38174148
Alignment:
| Q |
182 |
tgttcttgaagattttagtttcattttgttgatcaagtttcaagattatagcttaaccct |
241 |
Q |
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| T |
38174207 |
tgttgttgaagattttagtctcgttttcttgattaagtttcaagattctagcttaaccct |
38174148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 38201431 - 38201372
Alignment:
| Q |
182 |
tgttcttgaagattttagtttcattttgttgatcaagtttcaagattatagcttaaccct |
241 |
Q |
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| T |
38201431 |
tgttgttgaagattttagtctcgttttcttgattaagtttcaagattctagcttaaccct |
38201372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 38164207 - 38164254
Alignment:
| Q |
188 |
tgaagattttagtttcattttgttgatcaagtttcaagattatagctt |
235 |
Q |
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| T |
38164207 |
tgaagattttagtctcattttcttgattaagtttcaagattctagctt |
38164254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 38165540 - 38165594
Alignment:
| Q |
187 |
ttgaagattttagtttcattttgttgatcaagtttcaagattatagcttaaccct |
241 |
Q |
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| T |
38165540 |
ttgaagattttagcctcgttttcttgattaagtttcaagattctagcttaaccct |
38165594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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