View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9535_low_1 (Length: 247)

Name: NF9535_low_1
Description: NF9535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9535_low_1
NF9535_low_1
[»] chr4 (14 HSPs)
chr4 (1-237)||(48898735-48898971)
chr4 (152-202)||(49044045-49044095)
chr4 (138-202)||(48705238-48705302)
chr4 (154-202)||(48903115-48903163)
chr4 (52-104)||(49041111-49041163)
chr4 (164-202)||(7773684-7773722)
chr4 (164-202)||(48852851-48852889)
chr4 (159-189)||(48870713-48870743)
chr4 (159-189)||(48886399-48886429)
chr4 (60-102)||(48891496-48891538)
chr4 (44-102)||(49048528-49048586)
chr4 (152-193)||(48147578-48147619)
chr4 (159-192)||(50250637-50250670)
chr4 (53-101)||(45384842-45384890)
[»] chr8 (1 HSPs)
chr8 (60-202)||(15348940-15349082)
[»] chr7 (1 HSPs)
chr7 (50-102)||(48883878-48883930)
[»] chr6 (1 HSPs)
chr6 (164-202)||(21015994-21016032)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 48898735 - 48898971
Alignment:
Q  1 acttggtggttttaatgtcctatgactcgcactcacaatcccctaatattttatcacacttggagtttttctctttgagagataatgtgtggaaggaaat 100  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48898735 acttagtggttttattgtcctatgactcgcactcacaatcccctaatattttatcacacttggagtttttctcattgagagataatgtgtggaaggaaat 48898834  T
Q  101 tgtgtgcactcaatgcccttatacaagtacctttaatgataatccccatgcagggtcactctataatggggctattcattggttggcttttcatcgtgat 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898835 tgagtgcactcaatgcccttatacaagtacctttaatgataatccccatgcagggtcactctataatggggctattcattggttggcttttcatcgtgat 48898934  T
Q  201 ttccatccatggtatgataatgtcattgttgcctttg 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  48898935 ttccatccatggtatgataatgtcattgttgcctttg 48898971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 49044095 - 49044045
Alignment:
Q  152 agggtcactctataatggggctattcattggttggcttttcatcgtgattt 202  Q
    |||||| |||| ||||||||||||||| |||||||||||||||| ||||||    
T  49044095 agggtcgctctttaatggggctattcactggttggcttttcatcttgattt 49044045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 48705302 - 48705238
Alignment:
Q  138 gataatccccatgcagggtcactctataatggggctattcattggttggcttttcatcgtgattt 202  Q
    ||||| ||| ||||||||   ||||||||||||||||||||||||||||||| || || ||||||    
T  48705302 gataagcccaatgcaggggtgctctataatggggctattcattggttggcttatcgtcatgattt 48705238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 48903115 - 48903163
Alignment:
Q  154 ggtcactctataatggggctattcattggttggcttttcatcgtgattt 202  Q
    |||| |||| ||||||||||||||||| |||||||||||||| ||||||    
T  48903115 ggtcgctctttaatggggctattcattagttggcttttcatcatgattt 48903163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 49041163 - 49041111
Alignment:
Q  52 tatcacacttggagtttttctctttgagagataatgtgtggaaggaaattgtg 104  Q
    |||| ||||||||| ||||||| |||| || ||||||||||||||||||||||    
T  49041163 tatcccacttggagattttctcattgaaagctaatgtgtggaaggaaattgtg 49041111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 7773722 - 7773684
Alignment:
Q  164 taatggggctattcattggttggcttttcatcgtgattt 202  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  7773722 taatggggctattcattggttggctttgcgtcgtgattt 7773684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 48852851 - 48852889
Alignment:
Q  164 taatggggctattcattggttggcttttcatcgtgattt 202  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  48852851 taatggggctattcattggttggcttttcgtcatgattt 48852889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 48870713 - 48870743
Alignment:
Q  159 ctctataatggggctattcattggttggctt 189  Q
    |||||||||||||||||||||||||||||||    
T  48870713 ctctataatggggctattcattggttggctt 48870743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 48886399 - 48886429
Alignment:
Q  159 ctctataatggggctattcattggttggctt 189  Q
    |||||||||||||||||||||||||||||||    
T  48886399 ctctataatggggctattcattggttggctt 48886429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 48891496 - 48891538
Alignment:
Q  60 ttggagtttttctctttgagagataatgtgtggaaggaaattg 102  Q
    |||||||||||||| |||||||||||| ||||||| |||||||    
T  48891496 ttggagtttttctcattgagagataatatgtggaaagaaattg 48891538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 49048586 - 49048528
Alignment:
Q  44 taatattttatcacacttggagtttttctctttgagagataatgtgtggaaggaaattg 102  Q
    |||| ||| |||||| |||||||||||||| |||||||||||| | ||||| |||||||    
T  49048586 taatttttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattg 49048528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 48147619 - 48147578
Alignment:
Q  152 agggtcactctataatggggctattcattggttggcttttca 193  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  48147619 agggtcactttttagtggggctattcattggttggcttttca 48147578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 50250670 - 50250637
Alignment:
Q  159 ctctataatggggctattcattggttggcttttc 192  Q
    |||| |||||||||||||||||||||||||||||    
T  50250670 ctctttaatggggctattcattggttggcttttc 50250637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 45384890 - 45384842
Alignment:
Q  53 atcacacttggagtttttctctttgagagataatgtgtggaaggaaatt 101  Q
    ||||||||||||||||||||| ||||||| |||||  ||||| ||||||    
T  45384890 atcacacttggagtttttctcgttgagagctaatgcatggaaagaaatt 45384842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 15348940 - 15349082
Alignment:
Q  60 ttggagtttttctctttgagagataatgtgtggaaggaaattgtgtgcactcaatgcccttatacaagtacctttaatgataatccccatgcagggtcac 159  Q
    |||||||||||||| |||||||||||||||||||||||||| |  ||| || | ||||||||||  ||||  ||| |||| |  ||| | |||||||  |    
T  15348940 ttggagtttttctcgttgagagataatgtgtggaaggaaatggactgcccttattgcccttataggagtaattttgatgagatgcccaaagcagggtgtc 15349039  T
Q  160 tctataatggggctattcattggttggcttttcatcgtgattt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15349040 tctataatggggctattcattggttggcttttcatcgtgattt 15349082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 48883878 - 48883930
Alignment:
Q  50 tttatcacacttggagtttttctctttgagagataatgtgtggaaggaaattg 102  Q
    ||||||||| ||||||| |||||| |||||||||||| ||||||| |||||||    
T  48883878 tttatcacatttggagtgtttctcattgagagataatatgtggaaagaaattg 48883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 21015994 - 21016032
Alignment:
Q  164 taatggggctattcattggttggcttttcatcgtgattt 202  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  21015994 taatggggctattcattggttggcttttcgtcatgattt 21016032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University