View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9535_low_2 (Length: 236)
Name: NF9535_low_2
Description: NF9535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9535_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 38300922 - 38301048
Alignment:
| Q |
94 |
aaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgttt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38300922 |
aaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttactgaaactgggaaatctgaacttgatgttt |
38301021 |
T |
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| Q |
194 |
acttagatgagtcaaatttggattttc |
220 |
Q |
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||||||||||||||||||||||||||| |
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| T |
38301022 |
acttagatgagtcaaatttggattttc |
38301048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 38317575 - 38317701
Alignment:
| Q |
94 |
aaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgttt |
193 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| | |||||| |||||||||||| |
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| T |
38317575 |
aacctcattgctttccttttcacgtgtgaaatataataggaattgaaagtgcaccaacggcagcttgttactgaaactagaaaatctcaacttgatgttt |
38317674 |
T |
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| Q |
194 |
acttagatgagtcaaatttggattttc |
220 |
Q |
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| T |
38317675 |
acttagatgagtcaaatttggattttc |
38317701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 38309564 - 38309690
Alignment:
| Q |
94 |
aaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgttt |
193 |
Q |
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|||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||||||||| |||||||| |||||| |||||||||||| |
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| T |
38309564 |
aacctcattgctttccttttcacgtgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgttt |
38309663 |
T |
|
| Q |
194 |
acttagatgagtcaaatttggattttc |
220 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
38309664 |
acttagatgagtcaaatttggattttc |
38309690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 38314171 - 38314290
Alignment:
| Q |
100 |
attgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttacttag |
199 |
Q |
| |
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||||||| | |||| || |||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||| || |||||||||||||||||||| | |
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| T |
38314171 |
attgctttctttttaacttgtgaaatataatatgaattgaaaatgcaccatcaacagcttgttactaaaactggaaagtctgaacttgatgtttactttg |
38314270 |
T |
|
| Q |
200 |
atgagtcaaatttggatttt |
219 |
Q |
| |
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| T |
38314271 |
acgagtcagatttgaatttt |
38314290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 38306838 - 38306949
Alignment:
| Q |
110 |
ttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttacttagatgagtcaaa |
209 |
Q |
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||||||| ||||||||| |||||||||||||| || | |||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||| | |
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| T |
38306838 |
ttttcacttgtgaaatacaataggaattgaaaatgaaacatcaacagcttgttaccgaaactgaaaagtctcaacttgatgtttacttagatgagtcaga |
38306937 |
T |
|
| Q |
210 |
tttggattttct |
221 |
Q |
| |
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||||| |||||| |
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| T |
38306938 |
tttgggttttct |
38306949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 38326389 - 38326502
Alignment:
| Q |
101 |
ttgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttacttaga |
200 |
Q |
| |
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|||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||| ||||| || ||| |||||||||||||||| || |
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| T |
38326389 |
ttgctttccttttcacttgtgaaatgtaataggaattgaaaatgcaccatcaacaacttgtt------actggaaagtctcaacttgatgtttacttgga |
38326482 |
T |
|
| Q |
201 |
tgagtcaaatttggattttc |
220 |
Q |
| |
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||| |||| ||||||||||| |
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| T |
38326483 |
tgaatcaagtttggattttc |
38326502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 38321684 - 38321790
Alignment:
| Q |
108 |
ccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttacttagatgagtca |
207 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||||| | ||||||||| ||||| ||||| |||||||| ||||||||| ||||||| |
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| T |
38321684 |
ccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgtt------actggaaaatcccaacttgatatttacttagctgagtca |
38321777 |
T |
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| Q |
208 |
aatttggattttc |
220 |
Q |
| |
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||||||||||||| |
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| T |
38321778 |
aatttggattttc |
38321790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38300829 - 38300869
Alignment:
| Q |
1 |
gagaagttaaactctttatctgacggcctatttgatgtaag |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300829 |
gagaagttaaactctttatctgacggcctatttgatgtaag |
38300869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 38849756 - 38849635
Alignment:
| Q |
99 |
cattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttaatgaaactgggaaatctgaacttgatgtttactta |
198 |
Q |
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||||| || ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| || ||| ||||||||||||||||| |
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| T |
38849756 |
cattggtttccttttcacttgtgaaatgtaataggaattgaaagtgcaccatcagcagcttgttaccaaaactggaaagtctcaacttgatgtttactta |
38849657 |
T |
|
| Q |
199 |
gatgagtcaaatttggattttc |
220 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
38849656 |
gatgagtcagttttggattttc |
38849635 |
T |
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