View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9536_low_2 (Length: 600)

Name: NF9536_low_2
Description: NF9536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9536_low_2
NF9536_low_2
[»] chr7 (18 HSPs)
chr7 (12-139)||(6251870-6251997)
chr7 (140-318)||(6186195-6186381)
chr7 (140-318)||(6192711-6192897)
chr7 (428-572)||(6088689-6088835)
chr7 (177-251)||(6251997-6252071)
chr7 (247-329)||(6252210-6252292)
chr7 (428-524)||(6237082-6237173)
chr7 (39-128)||(6111730-6111819)
chr7 (255-325)||(6202712-6202782)
chr7 (428-524)||(6207786-6207877)
chr7 (428-524)||(6234204-6234295)
chr7 (428-528)||(6247066-6247161)
chr7 (87-134)||(6186126-6186173)
chr7 (87-134)||(6192642-6192689)
chr7 (548-582)||(6207917-6207951)
chr7 (548-582)||(6234335-6234369)
chr7 (428-464)||(6105839-6105875)
chr7 (140-218)||(6202629-6202715)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 6251870 - 6251997
Alignment:
Q  12 caaaggtgaagagatgatagaaataggatttgtgaattgatgatgatatatcaaaaatacaaagatgaagtatgagaggctctcaacgattggattttaa 111  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6251870 caaaggtgaagggatgatagaaatgggatttgtgaattgatgatgatatatcaaaaatacaaagatgaagtatgagaggctctcaacgattggattttaa 6251969  T
Q  112 agcgagtgagcagccgtggacccacaaa 139  Q
    || |||||||||||||||||||||||||    
T  6251970 agggagtgagcagccgtggacccacaaa 6251997  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 140 - 318
Target Start/End: Original strand, 6186195 - 6186381
Alignment:
Q  140 agtttgatattcgtagaacttgcatatcacctc-----ctcgatcatctatcact---agtattttctacatgtaaatgttcaattatgtatctttatag 231  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||||   ||||||||  ||| |||| |||||||||||||||||| ||||    
T  6186195 agtttgatattcgtagaacttgcatatcacctcacctcctcgatcatttatcactgctagtattttgaacacgtaattgttcaattatgtatcttcatag 6186294  T
Q  232 atagttataattgttaattgttaattagattcatctatatatctccgtttattattaaatgagttataggaagattaattttgttca 318  Q
    | ||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||  || ||||  ||||||||||||||||    
T  6186295 acagttaaaattgtaaattgttaattagattcatttatatatctcagtttattattaaatatgtcatagctagattaattttgttca 6186381  T

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Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 140 - 318
Target Start/End: Original strand, 6192711 - 6192897
Alignment:
Q  140 agtttgatattcgtagaacttgcatatcacctc-----ctcgatcatctatcact---agtattttctacatgtaaatgttcaattatgtatctttatag 231  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||||   ||||||||  ||| |||| |||||||||||||||||| ||||    
T  6192711 agtttgatattcgtagaacttgcatatcacctcacctcctcgatcatttatcactgctagtattttgaacacgtaattgttcaattatgtatcttcatag 6192810  T
Q  232 atagttataattgttaattgttaattagattcatctatatatctccgtttattattaaatgagttataggaagattaattttgttca 318  Q
    | ||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||  || ||||  ||||||||||||||||    
T  6192811 acagttaaaattgtaaattgttaattagattcatttatatatctcagtttattattaaatatgtcatagctagattaattttgttca 6192897  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 428 - 572
Target Start/End: Original strand, 6088689 - 6088835
Alignment:
Q  428 tatggtactcccttcatcaaatatttcttccaaacacctattcccatcccatttatgactccattgtcaacaagcttcatgatcaactcatctttgtcaa 527  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||     |||| | |  ||||||||||||||||||||||||||||||||||||||    
T  6088689 tatggtattcccatcatcaaatatttcttccaaacacttattcccat-----ttatcagtttattgtcaacaagcttcatgatcaactcatctttgtcaa 6088783  T
Q  528 tatcgtcaacattagataat-------aatacaaaaaacagttttgcaagtc 572  Q
      || ||| |||||||||||       |||||||||||||||| ||||||||    
T  6088784 actcatcatcattagataatagtgcacaatacaaaaaacagttctgcaagtc 6088835  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 6251997 - 6252071
Alignment:
Q  177 atcatctatcactagtattttctacatgtaaatgttcaattatgtatctttatagatagttataattgttaattg 251  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||| ||| ||||||||||||    
T  6251997 atcatctatccctagtattttctacatgtaaatggtcaattatgtatgtttatggataattaaaattgttaattg 6252071  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 6252210 - 6252292
Alignment:
Q  247 aattgttaattagattcatctatatatctccgtttattattaaatgagttataggaagattaattttgttcatgtgagcatag 329  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||   ||| |||||||||| ||||||||||||||||||    
T  6252210 aattgttaattggattcatctgtatatttccgtttattattaaatgaaagatatgaagattaatattgttcatgtgagcatag 6252292  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 524
Target Start/End: Original strand, 6237082 - 6237173
Alignment:
Q  428 tatggtactcccttcatcaaatatttcttccaaacacctattcccatcccatttatgactccattgtcaacaagcttcatgatcaactcatctttgt 524  Q
    ||||||| |||||||||||||||||||||||||| || ||||| |||     ||||   |||||||||||| |||||||||||||||||||||||||    
T  6237082 tatggtattcccttcatcaaatatttcttccaaagacatattctcat-----ttatttgtccattgtcaactagcttcatgatcaactcatctttgt 6237173  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 6111730 - 6111819
Alignment:
Q  39 atttgtgaattgatga-tgatatatcaaaaatacaaagatgaagtatgagaggctctcaacgattggattttaaagcgagtgagcagccgt 128  Q
    ||||||||| |||||| |||||||||| ||| ||||||||| || ||  |||||||||||| |||||||||||||| ||||||||||||||    
T  6111730 atttgtgaagtgatgaatgatatatcagaaacacaaagatgtagcatt-gaggctctcaacaattggattttaaagggagtgagcagccgt 6111819  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 6202712 - 6202782
Alignment:
Q  255 attagattcatctatatatctccgtttattattaaatgagttataggaagattaattttgttcatgtgagc 325  Q
    ||||||||||| |||||||||| ||||||||||||||  || ||||| |||||||||||||||| ||||||    
T  6202712 attagattcatttatatatctcagtttattattaaatatgtcataggtagattaattttgttcacgtgagc 6202782  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 524
Target Start/End: Original strand, 6207786 - 6207877
Alignment:
Q  428 tatggtactcccttcatcaaatatttcttccaaacacctattcccatcccatttatgactccattgtcaacaagcttcatgatcaactcatctttgt 524  Q
    ||||||| |||||||||||||||||||||||| | || ||||| |||     ||||   |||||||||||| |||||||||||||||||||||||||    
T  6207786 tatggtattcccttcatcaaatatttcttccagagacatattctcat-----ttatctgtccattgtcaactagcttcatgatcaactcatctttgt 6207877  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 524
Target Start/End: Original strand, 6234204 - 6234295
Alignment:
Q  428 tatggtactcccttcatcaaatatttcttccaaacacctattcccatcccatttatgactccattgtcaacaagcttcatgatcaactcatctttgt 524  Q
    ||||||| |||||||||||||||||||||||| | || ||||| |||     ||||   |||||||||||| |||||||||||||||||||||||||    
T  6234204 tatggtattcccttcatcaaatatttcttccagagacatattctcat-----ttatctgtccattgtcaactagcttcatgatcaactcatctttgt 6234295  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 6247066 - 6247161
Alignment:
Q  428 tatggtactcccttcatcaaatatttcttccaaacacctattcccatcccatttatgactccattgtcaacaagcttcatgatcaactcatctttgtcaa 527  Q
    ||||||| |||||||| |||||||||||||||||||| ||      ||||||||||    ||||||||||| | ||||||||||||||||||||| ||||    
T  6247066 tatggtattcccttcaacaaatatttcttccaaacacata-----ctcccatttatttgcccattgtcaactaacttcatgatcaactcatctttttcaa 6247160  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 6186126 - 6186173
Alignment:
Q  87 gaggctctcaacgattggattttaaagcgagtgagcagccgtggaccc 134  Q
    |||||||||||| ||||||||||| || || |||||||||||||||||    
T  6186126 gaggctctcaacaattggattttatagggaatgagcagccgtggaccc 6186173  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 6192642 - 6192689
Alignment:
Q  87 gaggctctcaacgattggattttaaagcgagtgagcagccgtggaccc 134  Q
    |||||||||||| ||||||||||| || || |||||||||||||||||    
T  6192642 gaggctctcaacaattggattttatagggaatgagcagccgtggaccc 6192689  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 582
Target Start/End: Original strand, 6207917 - 6207951
Alignment:
Q  548 aatacaaaaaacagttttgcaagtccttttccatc 582  Q
    ||||||||||||||||||||||||| |||||||||    
T  6207917 aatacaaaaaacagttttgcaagtctttttccatc 6207951  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 582
Target Start/End: Original strand, 6234335 - 6234369
Alignment:
Q  548 aatacaaaaaacagttttgcaagtccttttccatc 582  Q
    ||||||||||||||||||||||||| |||||||||    
T  6234335 aatacaaaaaacagttttgcaagtctttttccatc 6234369  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 6105839 - 6105875
Alignment:
Q  428 tatggtactcccttcatcaaatatttcttccaaacac 464  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  6105839 tatggtattcccttcaacaaatatttcttccaaacac 6105875  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 6202629 - 6202715
Alignment:
Q  140 agtttgatattcgtagaacttgcatatcac-----ctcctcgatcatctatca---ctagtattttctacatgtaaatgttcaatta 218  Q
    ||||| ||||||||||||||||||||||||     |||||||||||| |||||   |||||||||| |||| |||| ||||| ||||    
T  6202629 agtttaatattcgtagaacttgcatatcacctcacctcctcgatcatttatcactgctagtattttgtacacgtaattgttctatta 6202715  T

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