View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9536_low_3 (Length: 507)
Name: NF9536_low_3
Description: NF9536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9536_low_3 |
 | |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0401 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Complemental strand, 16919678 - 16919193
Alignment:
| Q |
7 |
tttggtgttggcttgcttcaattctcaaccaatctcttcatttttcagcgttggaagaaatttggggccttagtggaagaggttggtctcctcaatgtag |
106 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||| |
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| T |
16919678 |
tttggtgttggctggcttcaaatctcaaccaatctcttcatttttcagctttggaagaaatttggggccttagtgaaagaggttggtctccacagtgtag |
16919579 |
T |
|
| Q |
107 |
attaacaattattgctgctatcgttaacatcatttctgctatttggtatgctaggaatcaatgcagattccaaaataggaggattcattggaagagtgct |
206 |
Q |
| |
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||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16919578 |
attaacaattattgctgctgttgttaacattatttctgctatttggtacgctaggaatcaatgcagattccaaaataggaggattcattggaagagtgct |
16919479 |
T |
|
| Q |
207 |
atatctcatatcactgtaaatgtttctctgtctgctagcaactctaatttatcagctagctctgatattagagaattctccattcttaagggcttcaatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16919478 |
atatctcatatcactgtaaatgtttccctatctgctagcaactctaacttatcagctagctctgatattagagaattctccattcttaagggtttcaatg |
16919379 |
T |
|
| Q |
307 |
tttttattcatcccccaaagtttctaacagtgaaagaagttttatggaatcctccaattactggttggataaaaggaaactgtgatggagcttttgcatc |
406 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16919378 |
ttattattcatcccccaaagtttctaacagtgaaagaagttttatggaatcctccaattactggttggataaaaggaaactgtgatggagcttttgcatc |
16919279 |
T |
|
| Q |
407 |
tggtaaggctgcctgtggtggtattttcagaaacaattttggccaattcatgggatgttttgttgaaggactgagctttggtaatt |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
16919278 |
tggtaaggctgcctgtggtggtattttcagaaacaattttggccaattcatgggttgttttgcggaaggcctgagctttggtaatt |
16919193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 14628039 - 14627622
Alignment:
| Q |
7 |
tttggtgttggcttgcttcaattctcaaccaatctcttcatttttcagcgttggaagaaatttggggccttagtggaagaggttggtctcctcaatgtag |
106 |
Q |
| |
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||||||||||| | ||||| |||||||||||||| |||||||| | ||| || || ||||||||| | | |||| ||||||||||| ||||||| | |
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|
| T |
14628039 |
tttggtgttggttggcttctattctcaaccaatcccttcatttcttagctttagaggaaatttggagtttgagtgcgagaggttggtcacctcaattcac |
14627940 |
T |
|
| Q |
107 |
attaacaattattgctgctatcgttaacatcatttctgctatttggtatgctaggaatcaatgcagattccaaaataggaggattcattggaagagtgct |
206 |
Q |
| |
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|||| | || | | || | | |||| || | |||||||||||| ||||||| ||| | |||||| |||| |||| |||||||||| | |||| |
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| T |
14627939 |
attagctatcacttctacagttattaatattctctctgctatttggaatgctagaaatacttatagattcaaaaacaggaagattcattgggaaagtgtc |
14627840 |
T |
|
| Q |
207 |
atatctcatatcactgtaaatgtttctctgtctgctagcaactctaatttatcagctagctctgatattagagaattctccattcttaagggcttcaatg |
306 |
Q |
| |
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|||||||| |||| ||| ||||||||| ||||||| || || ||||| || |||||||| |||| |||||||||||||| || || |||| || |||| |
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| T |
14627839 |
atatctcaaatcattgttaatgtttctttgtctgcaagtaattctaagttgtcagctagttctggcattagagaattctctatcctaaaggcttttaatg |
14627740 |
T |
|
| Q |
307 |
tttttattcatcccccaaagtttctaacagtgaaagaagttttatggaatcctccaattactggttggataaaaggaaactgtgatggagcttttgcatc |
406 |
Q |
| |
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||| ||||| || | |||||| || | |||||| ||||| | | || ||| |||||| | || ||||| ||||| |||||||||||||| ||||| | |
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|
| T |
14627739 |
tttcaattcaccctctaaagttgcttatagtgaaggaagtcatctcgagtcccccaatttcaggatggattaaaggtaactgtgatggagcatttgctgc |
14627640 |
T |
|
| Q |
407 |
tggtaaggctgcctgtgg |
424 |
Q |
| |
|
|| |||||||| ||||| |
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|
| T |
14627639 |
agggaaggctgcatgtgg |
14627622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 43235725 - 43235800
Alignment:
| Q |
367 |
ctggttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcagaaacaa |
442 |
Q |
| |
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|||||||||||||||| || | |||||| || || ||||| ||||||||| | ||||||| |||||| |||||||| |
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| T |
43235725 |
ctggttggataaaagggaattatgatggcgccttagcatcaggtaaggcttcttgtggtgctatttttagaaacaa |
43235800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 372 - 492
Target Start/End: Original strand, 11403848 - 11403968
Alignment:
| Q |
372 |
tggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcagaaacaattttggccaattcatgggatgttttgttg |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
11403848 |
tggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtatattcataaacaattttggccaattcatgggatgttttgctg |
11403947 |
T |
|
| Q |
472 |
aaggactgagctttggtaatt |
492 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
11403948 |
aaggcctgagctttggtaatt |
11403968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 189344 - 189761
Alignment:
| Q |
7 |
tttggtgttggcttgcttcaattctcaaccaatctcttcatttttcagcgttggaagaaatttggggccttagtggaagaggttggtctcctcaatgtag |
106 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| |||||||| | ||| || || ||||||||| | | |||| ||||||||||| ||||||| | |
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|
| T |
189344 |
tttggtgttggttggcttctattctcaaccaatcccttcatttcttagctttagaggaaatttggagtttgagtgcgagaggttggtcacctcaattcac |
189443 |
T |
|
| Q |
107 |
attaacaattattgctgctatcgttaacatcatttctgctatttggtatgctaggaatcaatgcagattccaaaataggaggattcattggaagagtgct |
206 |
Q |
| |
|
|||| | || | | || | | |||| || | |||||||||||| ||||||| ||| | |||||| |||| |||| |||||||||| | |||| |
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|
| T |
189444 |
attagctatcacttctacagttattaatattctctctgctatttggaatgctagaaatacttatagattcaaaaacaggaagattcattgggaaagtgtc |
189543 |
T |
|
| Q |
207 |
atatctcatatcactgtaaatgtttctctgtctgctagcaactctaatttatcagctagctctgatattagagaattctccattcttaagggcttcaatg |
306 |
Q |
| |
|
|||||||| |||| ||| ||||||||| ||||||| || || ||||| || |||||||| |||| |||||||||||||| || || |||| || |||| |
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|
| T |
189544 |
atatctcaaatcattgttaatgtttctttgtctgcaagtaattctaagttgtcagctagttctggcattagagaattctctatcctaaaggcttttaatg |
189643 |
T |
|
| Q |
307 |
tttttattcatcccccaaagtttctaacagtgaaagaagttttatggaatcctccaattactggttggataaaaggaaactgtgatggagcttttgcatc |
406 |
Q |
| |
|
||| ||||| || | |||||| || | |||||| ||||| | | || ||| |||||| | || ||||| ||||| |||||||||||||| ||||| | |
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|
| T |
189644 |
tttcaattcaccctctaaagttgcttatagtgaaggaagtcatctcgagtcccccaatttcaggatggattaaaggtaactgtgatggagcatttgctgc |
189743 |
T |
|
| Q |
407 |
tggtaaggctgcctgtgg |
424 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
189744 |
agggaaggctgcatgtgg |
189761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 31437999 - 31437869
Alignment:
| Q |
357 |
cctccaattactggttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcagaaacaattttggccaattca |
456 |
Q |
| |
|
|||| |||| || |||||||||| || || ||||||||||| |||||||||||||||||||| ||||||| || || |||||||| ||||| ||||| | |
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|
| T |
31437999 |
cctcaaattgcttgttggataaagggtaattgtgatggagcatttgcatctggtaaggctgcttgtggtgaaatctttagaaacaagtttggtcaattta |
31437900 |
T |
|
| Q |
457 |
tgggatgttttgttgaaggactgagctttgg |
487 |
Q |
| |
|
||||| ||||| ||||| |||| |||||| |
|
|
| T |
31437899 |
tgggagcttttgctgaagttctgaactttgg |
31437869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 460
Target Start/End: Original strand, 22051924 - 22052017
Alignment:
| Q |
367 |
ctggttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcagaaacaattttggccaattcatggg |
460 |
Q |
| |
|
|||||||||||||||| || |||||||| || |||||||| ||||||||| | ||||||| |||||| |||||||| |||| || |||||||| |
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|
| T |
22051924 |
ctggttggataaaagggaattgtgatggcgcctttgcatcaggtaaggcttcttgtggtgctatttttagaaacaagcttggtcagttcatggg |
22052017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0401 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0401
Description:
Target: scaffold0401; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 12431 - 12363
Alignment:
| Q |
371 |
ttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcagaaa |
439 |
Q |
| |
|
|||||| ||||| || |||||||| || ||||| ||||| || ||||||||||||||||| || ||||| |
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|
| T |
12431 |
ttggattaaagggaattgtgatggtgcctttgcctctgggaaagctgcctgtggtggtatctttagaaa |
12363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 475
Target Start/End: Original strand, 15183046 - 15183150
Alignment:
| Q |
371 |
ttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcagaaacaattttggccaattcatgggatgttttgtt |
470 |
Q |
| |
|
|||||| ||||| || |||| ||| || ||||| ||||| || ||||||||||||||||| || ||||| | |||| ||||| |||||||||||| | |
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|
| T |
15183046 |
ttggattaaagggaattgtgttggtgcctttgcctctgggaaagctgcctgtggtggtatctttagaaatagacttggtcaatttttgggatgttttgct |
15183145 |
T |
|
| Q |
471 |
gaagg |
475 |
Q |
| |
|
||||| |
|
|
| T |
15183146 |
gaagg |
15183150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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