View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9536_low_5 (Length: 249)
Name: NF9536_low_5
Description: NF9536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9536_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34056734 - 34056495
Alignment:
| Q |
1 |
ttttggcttgccttttcgctctttcttttattgagtgtggttaaaaatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34056734 |
ttttggcttgccttttcgctctttcttttattgagtgtagttaaaa-tttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacat |
34056636 |
T |
|
| Q |
101 |
tatgaaatttctagatcataattatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34056635 |
tatggaatttctagatcataattatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggcagcacctgttcttgaaaatttg |
34056536 |
T |
|
| Q |
201 |
ggtgctgatccaactaatattcgtactcagcctagtattat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
34056535 |
ggtgctgatccaactaatattcgtactcagcttaatattat |
34056495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 40242585 - 40242785
Alignment:
| Q |
41 |
ttaaaaatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatgaaatttctagatcataattatatccgatctgagcac |
140 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||||||||||| ||| ||||||||| || ||||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
40242585 |
ttaaaaattagtattcacgtgcaatactttgcttgtgcttgctgaaagtttggcttacattttggaatttctaggtcacaattatatcggatctgagcac |
40242684 |
T |
|
| Q |
141 |
ctgttattgggttttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtatta |
240 |
Q |
| |
|
|| | |||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||||| || ||| | ||||||| |
|
|
| T |
40242685 |
ttgcttttgggtcttcttcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggtgccgacccaactaatattcgcacccaggcaagtatta |
40242784 |
T |
|
| Q |
241 |
t |
241 |
Q |
| |
|
| |
|
|
| T |
40242785 |
t |
40242785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 47379527 - 47379689
Alignment:
| Q |
79 |
ttgctgaaattttagcttacattatgaaatttctagatcataattatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggc |
178 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||| ||| ||||||||| |||||||||||||| | |||||| ||||||| ||||||||||||||||| |
|
|
| T |
47379527 |
ttgctgaaattttggcttacattttggaatttctaggtcacaattatatcggatctgagcacctgcttttgggtcttcttcgagagggtgagggtgtggc |
47379626 |
T |
|
| Q |
179 |
agcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtattat |
241 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
47379627 |
cgcacgtgttcttgaaaatttgggtgctgatccaactaatattcgcacccaggctagtattat |
47379689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 77 - 241
Target Start/End: Original strand, 47815056 - 47815220
Alignment:
| Q |
77 |
gcttgctgaaattttagcttacattatgaaatttctagatcataattatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtg |
176 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||| ||| |||||||| || ||||| ||||| | |||| | ||||||| |||||||| |||||| |
|
|
| T |
47815056 |
gcttgctgaaattttgccttacattttggaatttctaggtcacaattatattggaactgagaacctgcttttggatcttcttcgagagggtgaaggtgtg |
47815155 |
T |
|
| Q |
177 |
gcagcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtattat |
241 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||||||||||||||| || ||| |||||||||| |
|
|
| T |
47815156 |
gcagcacgtgttcttgaaaatttgggcgatgatccaactaatattcgcacccaggctagtattat |
47815220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 45111824 - 45111911
Alignment:
| Q |
154 |
ttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaactaatattcgtactcagcctagtattat |
241 |
Q |
| |
|
||||||| ||||||||||| || |||||| ||||||||||||| | || |||||||| ||||||||||| || ||| || ||||||| |
|
|
| T |
45111824 |
ttcttcgagagggtgagggagtagcagcacgtgttcttgaaaacctaggcgctgatcctactaatattcgcacacaggctcgtattat |
45111911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University