View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9536_low_7 (Length: 239)
Name: NF9536_low_7
Description: NF9536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9536_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 34056789 - 34056950
Alignment:
| Q |
1 |
ttcatattgctcaaccatcgtatcaatcaaagcaacaatcaagtcatgcatggaataaatcatacaaataataagtgatgaacacaattttggtaaacaa |
100 |
Q |
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| T |
34056789 |
ttcatattgctcaaccatcgtatcaatcaaagcaacaatcaagtcatgcatgaaataaatcatacaaataataagttatgaacacaattttggtaaacaa |
34056888 |
T |
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| Q |
101 |
agtataattgatttgatatgc-aaatgacacataaagctgtgttatcgtataccaagttggc |
161 |
Q |
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| T |
34056889 |
agtataattgatttgatatgcaaaatgacacatgaagctatgttatcgtataccaagttggc |
34056950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 34057629 - 34057676
Alignment:
| Q |
173 |
ttactagaatatctatcattgtagttttgaatacattttaattgtcat |
220 |
Q |
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| T |
34057629 |
ttactagaatatctatcattgtagttttgaatacattttaattgtcat |
34057676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 47379397 - 47379276
Alignment:
| Q |
1 |
ttcatattgctcaaccatcgtatcaatcaaagcaacaatcaagtcatgcatggaataaatcatacaaataataagtgatgaacacaattt--tggtaaac |
98 |
Q |
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| T |
47379397 |
ttcaaattggtcaaccatcagatcaatcaaagcaacaatcaaggcatgtttggaataaatcatataaataacaagtcatgaacacaattttctcgtaaac |
47379298 |
T |
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| Q |
99 |
aaagtataattgatttgatatg |
120 |
Q |
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| T |
47379297 |
aaagtataattgatttgatatg |
47379276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 47814945 - 47814780
Alignment:
| Q |
1 |
ttcatattgctcaaccatcgtatcaatcaaagcaacaatcaagtcatgcatggaataaatcatacaaataataa----gtgatgaacacaattttggtaa |
96 |
Q |
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|||| |||| ||||||||| |||||||| ||||||||||||| |||| |||||||||||||| ||||||||| || |||||||||||||| ||| |
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| T |
47814945 |
ttcaaattggtcaaccatcagatcaatcatagcaacaatcaaggcatgtttggaataaatcatataaataataaataagtcatgaacacaattttcataa |
47814846 |
T |
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| Q |
97 |
acaaagtataattgatttgatatg-caaatgacacataaagctgtgttatcgtataccaagttggc |
161 |
Q |
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| T |
47814845 |
acaaagtataattgatttgatatgaaaaacgacatataaagatatgctatcgtttaccaagttggc |
47814780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 40242464 - 40242365
Alignment:
| Q |
22 |
atcaatcaaagcaacaatcaagtcatgcatggaataaatcatacaaataataagtgatgaacacaattttggtaaacaaagtataattgatttgatatgc |
121 |
Q |
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|||| ||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||||||||| ||||||| |
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| T |
40242464 |
atcactcaaagcaaaaatcaagtcatgtttggaatatatcatacaaataataagtcgtgaacac-atttttgtaaacaa--gataattgattagatatgc |
40242368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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