View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9537_low_3 (Length: 288)
Name: NF9537_low_3
Description: NF9537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9537_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 26881506 - 26881557
Alignment:
| Q |
117 |
aattactaatattaagagtctaatcgaggacagtttaggtgaaatggtgaac |
168 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26881506 |
aattactaatattaagagtctaatcgaggtcagtttaggtgaaatggtgaac |
26881557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 26881444 - 26881478
Alignment:
| Q |
53 |
acaaattgaccataaaatctaccccaaatagtttt |
87 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26881444 |
acaaattgaccataatatctaccccaaatagtttt |
26881478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University