View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9537_low_5 (Length: 251)

Name: NF9537_low_5
Description: NF9537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9537_low_5
NF9537_low_5
[»] chr7 (12 HSPs)
chr7 (1-251)||(21787196-21787461)
chr7 (1-59)||(21746565-21746623)
chr7 (87-248)||(21995031-21995202)
chr7 (171-251)||(21667100-21667180)
chr7 (171-251)||(21658244-21658324)
chr7 (172-244)||(21789961-21790033)
chr7 (169-251)||(21630561-21630643)
chr7 (5-68)||(21803358-21803420)
chr7 (171-248)||(21706088-21706165)
chr7 (186-243)||(21746435-21746491)
chr7 (171-248)||(21765714-21765791)
chr7 (33-70)||(21794112-21794149)
[»] scaffold0182 (1 HSPs)
scaffold0182 (176-248)||(27058-27130)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 21787461 - 21787196
Alignment:
Q  1 cactctttatttctgagatactcatagtcaagactcaagaagggacacaccaacttaactaaaaaattcaacaaaatc--cagagaagtgaagtacacta 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| | ||||  ||||||||| ||||||||||    
T  21787461 cactctttatttctgagatactcatagtcaagactcatgaagggacacaccaacttaacgcaaaaattcaaaacaatccacagagaagtaaagtacacta 21787362  T
Q  99 cttgccttaccagaaggcaattattatgcgtggtgcattaccaactcaaac-------------gttacgaaattttattcgtatgaaagcaacattgct 185  Q
    |||||||||||||||| ||||||||||||  |||||| ||||||| || ||             |||||||| ||||| | ||||||||||||||||||     
T  21787361 cttgccttaccagaagacaattattatgcacggtgcaataccaacacatactcgacctatttttgttacgaatttttaattgtatgaaagcaacattgcc 21787262  T
Q  186 ataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaagaaca 251  Q
    ||||||||||||||||||  || |||||| ||||  | ||||||||| ||||||||||||||||||    
T  21787261 ataacgaaccacctttatttgctagccgggttaaccgtaaaccatgtttgaatgaaagtaagaaca 21787196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21746623 - 21746565
Alignment:
Q  1 cactctttatttctgagatactcatagtcaagactcaagaagggacacaccaacttaac 59  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  21746623 cactctttatttttgaaatactcatagtcaagactcaagaagggacacacaaacttaac 21746565  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 21995202 - 21995031
Alignment:
Q  87 tgaagtacactacttgccttaccagaaggcaattattatgcgtggtgcattaccaactcaa---ac--------gttacgaaattttattcgtatgaaag 175  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||| ||    ||        |||||||||||||| || || |||||    
T  21995202 tgaagtacac-acttgccttaccagaagacaattattatgtgtggtgtattaccaacacacttgacctatttttgttacgaaattttaatcttaagaaag 21995104  T
Q  176 caacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaaga 248  Q
    ||||||||| ||||| ||||||||||||   | |||||| | || || ||||||||||||||| |||||||||    
T  21995103 caacattgccataacaaaccacctttatttactagccggttgaactgtaaaccatgtctgaattaaagtaaga 21995031  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 21667180 - 21667100
Alignment:
Q  171 gaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaagaaca 251  Q
    |||| ||||||||  ||||||| |||||||||| |||||||||| | ||| | ||||||||||||||||||||||||||||    
T  21667180 gaaaacaacattgtcataacgagccacctttattagcaagccgggtgaatcgtaaaccatgtctgaatgaaagtaagaaca 21667100  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 21658324 - 21658244
Alignment:
Q  171 gaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaagaaca 251  Q
    |||| ||||||||  |||||||| ||| |||||  || |||||| | ||||| ||||||||||||||||||||||||||||    
T  21658324 gaaaacaacattgtcataacgaatcacatttatttgctagccggttgaattgtaaaccatgtctgaatgaaagtaagaaca 21658244  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 21790033 - 21789961
Alignment:
Q  172 aaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagt 244  Q
    ||||||||||||| ||||| |||||||||||  |||||||||| | ||  ||||||||||| |||||||||||    
T  21790033 aaagcaacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccatgtttgaatgaaagt 21789961  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 21630643 - 21630561
Alignment:
Q  169 atgaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaagaaca 251  Q
    |||||| ||||||||  |||||||| ||| |||||  || || ||| | ||||| ||||||||||||||||||||||||||||    
T  21630643 atgaaaacaacattgtcataacgaatcacttttatttgctagtcgggtgaattgtaaaccatgtctgaatgaaagtaagaaca 21630561  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 21803358 - 21803420
Alignment:
Q  5 ctttatttctgagatactcatagtcaagactcaagaagggacacaccaacttaactaaaaaatt 68  Q
    |||||||| ||| |||||||||||||||||||||||| |||||| | ||||||||  |||||||    
T  21803358 ctttatttttgaaatactcatagtcaagactcaagaa-ggacactcaaacttaacccaaaaatt 21803420  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 21706165 - 21706088
Alignment:
Q  171 gaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaaga 248  Q
    |||| ||||||||  |||||||| |||||||||  |  |||||| | || || |||||||||||||||||||||||||    
T  21706165 gaaaacaacattgtcataacgaagcacctttatttgttagccgggtgaactgtaaaccatgtctgaatgaaagtaaga 21706088  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 21746491 - 21746435
Alignment:
Q  186 ataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaag 243  Q
    ||||| ||||||||||||  || |||||| | ||||||||||||||||||||||||||    
T  21746491 ataactaaccacctttatt-gctagccgggtgaattgcaaaccatgtctgaatgaaag 21746435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 21765791 - 21765714
Alignment:
Q  171 gaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaaga 248  Q
    |||| ||||||||  ||||||||||||| ||||  || |||||| | ||  | |||||||||||||||||||||||||    
T  21765791 gaaaacaacattgtcataacgaaccaccattatttgctagccgggtgaaccgtaaaccatgtctgaatgaaagtaaga 21765714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 21794149 - 21794112
Alignment:
Q  33 actcaagaagggacacaccaacttaactaaaaaattca 70  Q
    |||||||||||||||||||||||||||  |||||||||    
T  21794149 actcaagaagggacacaccaacttaacccaaaaattca 21794112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 27130 - 27058
Alignment:
Q  176 caacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaaga 248  Q
    ||||||||  ||||||||| ||||||||  || |||||| | ||  | |||||||||||||||||||||||||    
T  27130 caacattgtcataacgaacaacctttatttgctagccgggtgaaccgtaaaccatgtctgaatgaaagtaaga 27058  T

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