View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9537_low_6 (Length: 245)

Name: NF9537_low_6
Description: NF9537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9537_low_6
NF9537_low_6
[»] chr6 (3 HSPs)
chr6 (1-69)||(13167229-13167297)
chr6 (1-69)||(21861844-21861912)
chr6 (21-55)||(9403026-9403060)
[»] chr5 (2 HSPs)
chr5 (1-55)||(24136649-24136703)
chr5 (7-55)||(11335605-11335653)
[»] chr3 (1 HSPs)
chr3 (1-69)||(50295343-50295411)
[»] chr2 (2 HSPs)
chr2 (1-52)||(38584359-38584410)
chr2 (1-55)||(8986038-8986092)
[»] chr4 (2 HSPs)
chr4 (1-51)||(16870310-16870360)
chr4 (1-55)||(16870476-16870530)
[»] chr7 (3 HSPs)
chr7 (1-55)||(46964011-46964065)
chr7 (1-55)||(44338124-44338178)
chr7 (2-51)||(11828784-11828833)
[»] chr8 (2 HSPs)
chr8 (1-55)||(20241801-20241855)
chr8 (1-55)||(20251212-20251266)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13167297 - 13167229
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaagcatagacaaacat 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||    
T  13167297 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgacccaaagcaaccagagacaaacat 13167229  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21861912 - 21861844
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaagcatagacaaacat 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || ||||| ||||    
T  21861912 tgaagaaccaaaacaaacaaaaccaaacgaaccaagacaagctgagccaaagcaaccagagacatacat 21861844  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 9403060 - 9403026
Alignment:
Q  21 aaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    ||||||||||||||||||||| |||||||||||||    
T  9403060 aaccaaacgaaccaagacaagttgaaccaaagcaa 9403026  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24136703 - 24136649
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24136703 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 24136649  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 11335605 - 11335653
Alignment:
Q  7 accaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    |||||||||||| |||| |||| |||||| ||||| |||||||||||||    
T  11335605 accaaaacgaaccaaactaaacaaaccaaaacaagttgaaccaaagcaa 11335653  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 50295411 - 50295343
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaagcatagacaaacat 69  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||    
T  50295411 tgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaaccatagacagacat 50295343  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38584359 - 38584410
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaag 52  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38584359 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagttgaaccaaag 38584410  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8986092 - 8986038
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  8986092 tgaagaaccaaaacgaacgtaaccaaacgaaccaagacaagttgaaccaaagcaa 8986038  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16870360 - 16870310
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaa 51  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16870360 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaaactgaaccaaa 16870310  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16870530 - 16870476
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  16870530 tgaagaaccaaaacgaacgtaaccaaacgaaccaagacaagttgaaccaaagcaa 16870476  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 46964011 - 46964065
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||| ||||||||    
T  46964011 tgaagaaccaaaacgaacgtaaccaaacgaaccaagacaagttgaatcaaagcaa 46964065  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44338178 - 44338124
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    |||| ||||||||| |||||||||||||||||||| ||||  |||||||||||||    
T  44338178 tgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaaattgaaccaaagcaa 44338124  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11828784 - 11828833
Alignment:
Q  2 gaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaa 51  Q
    ||||||||||||  |||  ||||||||||||||||||||| |||||||||    
T  11828784 gaagaaccaaaattaaccgaaccaaacgaaccaagacaagttgaaccaaa 11828833  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20241855 - 20241801
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    |||| ||||||||| |||||||||||||||||||| ||||  |||||||||||||    
T  20241855 tgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaaattgaaccaaagcaa 20241801  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20251212 - 20251266
Alignment:
Q  1 tgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaa 55  Q
    |||| ||||||||| |||||||||||||||||||| ||||  |||||||||||||    
T  20251212 tgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaaattgaaccaaagcaa 20251266  T

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