View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9538_10 (Length: 486)
Name: NF9538_10
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 36185344 - 36184866
Alignment:
| Q |
1 |
gtggaagcatgaaatttgaactttccccattgatttaagtaggnnnnnnnnnnt-ttgtgttgtagctttgtaacttcttgggccattatgtgcttttgg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36185344 |
gtggaagcatgaaatttgaactttccccattgatttaagtaggaaaaaaaaaaaattgtgttgtagctttgtaacttcttgggccattatgtgcttttgg |
36185245 |
T |
|
| Q |
100 |
ataaggaggaggagaatggaaacactgggtggtttgggtgacacttacattcttggcatggatgatagggaacagattatgattgctttaagaaagaaag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36185244 |
ataaggaggaggagaatggaaacactgggtggtttgggtgccacttacattcttggcatggatgatagggaacagattatgattgctttaagaaagaaag |
36185145 |
T |
|
| Q |
200 |
accaaggagaaaatataatcggattatgcggg-ccagataaaatagtcaagcattctgttaaaacagctataagaaaagctgagagagatcaattgttcc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
36185144 |
accaaggagaaaatataatcggattatgcggggccagataaaatagtcaagcattctgttaaaacatctagaagaaaagctgagagagatcaattgttcc |
36185045 |
T |
|
| Q |
299 |
aaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctcaattttgatgataagatcga |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36185044 |
aaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctgaattttgatgataagatcga |
36184945 |
T |
|
| Q |
399 |
tctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtgc |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36184944 |
tctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtgc |
36184866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 127 - 476
Target Start/End: Complemental strand, 36208400 - 36208051
Alignment:
| Q |
127 |
ggtggtttgggtgacacttacattcttggcatggatgatagggaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattat |
226 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36208400 |
ggtggtttgggtgccagttacattcttggcatggatgatagggaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattat |
36208301 |
T |
|
| Q |
227 |
gcgggccagataaaatagtcaagcattctgttaaaacagctataagaaaagctgagagagatcaattgttccaaaagattgtcacagcaactgtgaccaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36208300 |
gcgggccagataaaatagtcaagcattctgttaaaacatctagaagaaaagctgagagagatcaattgttccaaaagattgtcacagcaactgtgaccaa |
36208201 |
T |
|
| Q |
327 |
gaaaccagacattagcaagattcaaacacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgt |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36208200 |
gaaaccagacattagcaagattcaaacacagattggtattgcaataggtctgaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgt |
36208101 |
T |
|
| Q |
427 |
tatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtg |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36208100 |
tatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtg |
36208051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 198 - 476
Target Start/End: Complemental strand, 36202857 - 36202579
Alignment:
| Q |
198 |
agaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagctataagaaaagctgagagagatcaattgttc |
297 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| ||| ||||||| |||||| | ||| | ||| |||| | |||||||||||||||||||| |
|
|
| T |
36202857 |
agaccaaggagaaaacataattggattatgcgggccagatgaaagagtcaaggcttctgtcacaaccgttatgagaagatctgagagagatcaattgttc |
36202758 |
T |
|
| Q |
298 |
caaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctcaattttgatgataagatcg |
397 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||| ||||||| |||| ||||||||||||||||| | |
|
|
| T |
36202757 |
gaaaagattgtcacagcaaccgtgacgaagaagccagacattacacagattcaaacacaaattggtgatgcaatatgtctgaattttgatgataagattg |
36202658 |
T |
|
| Q |
398 |
atctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtg |
476 |
Q |
| |
|
||||| ||||| |||| |||||| ||| ||| ||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
36202657 |
atctagctgaatcatcctgttgcatgtcttacggtaataacaaaagaataagaactgcagaaagagctcttctactgtg |
36202579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 169 - 476
Target Start/End: Complemental strand, 36197327 - 36197026
Alignment:
| Q |
169 |
gaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagcta |
268 |
Q |
| |
|
||||| ||||||| ||| ||||| || |||||||||||||||||| || |||||||| |||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
36197327 |
gaacaaattatgagtgcactaagagtgagagaccaaggagaaaatatcattggattatgtgggccagaaaaaagagtcaagcattctgcaaaaacagcta |
36197228 |
T |
|
| Q |
269 |
taagaaaagctgagagagatcaattgttccaaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgc |
368 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||| ||| |
|
|
| T |
36197227 |
taagaagagctgagagagatcaattattccaaaagattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaacactaattggtgatgc |
36197128 |
T |
|
| Q |
369 |
aataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctctt |
468 |
Q |
| |
|
||||| ||||||||||||||| |||| | ||||| || |||||||| ||| || |||||||| ||||||||| |||||||||||||||||| | |
|
|
| T |
36197127 |
aatag------attttgatgataagacggatccagctgaatcaacttgttgcatgttttttggtaatagaaaaagaatggcaactgcagaaagagctcat |
36197034 |
T |
|
| Q |
469 |
cttctgtg |
476 |
Q |
| |
|
||| |||| |
|
|
| T |
36197033 |
cttttgtg |
36197026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 198 - 471
Target Start/End: Complemental strand, 36213764 - 36213485
Alignment:
| Q |
198 |
agaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagctataagaaaagctgagagagatcaattgttc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||| ||| ||| | || |||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36213764 |
agaccaaggagaaaatataatcggattatgcggcccggatgaaagagtaaggctttctgtaaaaacagctataagaagagctgagagagatcaattgttc |
36213665 |
T |
|
| Q |
298 |
caaaagattgtc------acagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctcaattttgatgata |
391 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||||| | |||||||||||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
36213664 |
caaaagattgtcacagtcacagcaactgtgacaaagaagccagacattacaatgattcaaacacaaattggtgatgcaataggtctcaattttaatgata |
36213565 |
T |
|
| Q |
392 |
agatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttctt |
471 |
Q |
| |
|
|||| || || | ||| || |||||||| |||||| |||||||| |||| | ||||||||||||||||||||| |||| |
|
|
| T |
36213564 |
agatgaatgtagccgaatcaacttgttgcatgtgttttggtaatagtaaaacagtgacaactgcagaaagagctcatctt |
36213485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 363
Target Start/End: Complemental strand, 36215031 - 36214837
Alignment:
| Q |
169 |
gaacagattatgattgctttaagaaagaaagaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagcta |
268 |
Q |
| |
|
|||||||||| || ||| |||||| || |||||| || ||| ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
36215031 |
gaacagattacgagtgcattaagagtgagagaccagagataaagtataatcggattatgcgggccagatgaaaaagtcaagcattctgtaaaaacagcta |
36214932 |
T |
|
| Q |
269 |
taagaaaagctgagagagatcaattgttccaaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggt |
363 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
36214931 |
taagaagagctgagagagatcaattgttccaaaagattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaacacaaattggt |
36214837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 213 - 471
Target Start/End: Complemental strand, 36201455 - 36201199
Alignment:
| Q |
213 |
tataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagctataagaaaagctgagagagatcaattgttccaaaagattgtcaca |
312 |
Q |
| |
|
||||||| |||||| |||||||||| || ||||||| ||||||| ||| |||||||||||| |||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
36201455 |
tataatcagattatctgggccagatagaagagtcaagtattctgtaaaagcagctataagaagagctgagaga--tcaattgttccaaaagactgtcaca |
36201358 |
T |
|
| Q |
313 |
gcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacat |
412 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| || || | | || || |
|
|
| T |
36201357 |
gcaactgtgaccaagaagccagacattaataagattcaaacacagattggtgatgcaataggtctcaattttaatgatatgacggaggcagcaaaatcaa |
36201258 |
T |
|
| Q |
413 |
cttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttctt |
471 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
36201257 |
cttgttgcatgtgttttggtaatagtaaaagaatgacaactgcagatagagctcatctt |
36201199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 198 - 465
Target Start/End: Complemental strand, 36210416 - 36210149
Alignment:
| Q |
198 |
agaccaaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagctataagaaaagctgagagagatcaattgttc |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||| ||||||||||||||| ||| |||| |||||| | |||| |
|
|
| T |
36210416 |
agaccaaggagaaaatataatcggattatgcgggccaaaaaaaagagtcgagcattctgcacaaacagctataagaagagcagagaaagatcattcgttc |
36210317 |
T |
|
| Q |
298 |
caaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctcaattttgatgataagatcg |
397 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||| | ||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
36210316 |
caaaagattgtcacaacaactgtgacaaagaagccagacattacaaagattcaaacagaaattggcaatgcaataggtctcaattttaatgataagacgt |
36210217 |
T |
|
| Q |
398 |
atctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagct |
465 |
Q |
| |
|
|| || | | | || || ||||| | ||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
36210216 |
atgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagct |
36210149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 205 - 384
Target Start/End: Complemental strand, 36188928 - 36188749
Alignment:
| Q |
205 |
ggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagctataagaaaagctgagagagatcaattgttccaaaaga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| |||| ||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
36188928 |
ggagaaaatataatcggattatgcgggccaaaaaaaagagtcgagcgttctgcattaacagctataagaacagctgagaaagatcaattgttccaaaaga |
36188829 |
T |
|
| Q |
305 |
ttgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggtctcaatttt |
384 |
Q |
| |
|
|||||||| ||||||| || ||||| |||||||||| |||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
36188828 |
ttgtcacaacaactgtaacaaagaagccagacattacaaagattcaaacagaaattggctatgcaataggtctcaatttt |
36188749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 36183650 - 36183540
Alignment:
| Q |
276 |
agctgagagagatcaattgttccaaaagattgtcacagcaactgtgaccaagaaaccagacattagcaagattcaaacacagattggtattgcaataggt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||| |||| | ||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
36183650 |
agctgagagagatcaattgttccaaaagatcgtcttagcaactgtgacatagaagcttgacattacatagattcgaacacaaattggtattgcaataggt |
36183551 |
T |
|
| Q |
376 |
ctcaattttga |
386 |
Q |
| |
|
||||||||||| |
|
|
| T |
36183550 |
ctcaattttga |
36183540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 36199428 - 36199303
Alignment:
| Q |
203 |
aaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacagctataagaaaagctgagagagatcaattgttccaaaa |
302 |
Q |
| |
|
||||||||||| |||||||| |||| || | |||||||| ||||||| || | | ||||| | ||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
36199428 |
aaggagaaaatttaatcggactatgtggtctagataaaagagtcaaggcttatatgaaaaccgtcataagaagagccgagagagatcaattgttccaaaa |
36199329 |
T |
|
| Q |
303 |
gattgtcacagcaactgtgaccaaga |
328 |
Q |
| |
|
|||||||||| |||||||||| |||| |
|
|
| T |
36199328 |
gattgtcacaacaactgtgacaaaga |
36199303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 36199282 - 36199172
Alignment:
| Q |
366 |
tgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagct |
465 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||| || ||||| | |||||||| |||||| || |||||| |||||| |||||||| ||||||||||| |
|
|
| T |
36199282 |
tgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagagct |
36199183 |
T |
|
| Q |
466 |
cttcttctgtg |
476 |
Q |
| |
|
||||||||||| |
|
|
| T |
36199182 |
cttcttctgtg |
36199172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 36208494 - 36208441
Alignment:
| Q |
60 |
ttgtagctttgtaacttcttgggccattatgtgcttttggataaggaggaggag |
113 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
36208494 |
ttgtagctttgactcttcttgggtcattatgtgcttttggatacggaggaggag |
36208441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36208550 - 36208513
Alignment:
| Q |
1 |
gtggaagcatgaaatttgaactttccccattgatttaa |
38 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36208550 |
gtggaagcatgaaatttgtactttccccattgatttaa |
36208513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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