View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9538_11 (Length: 473)
Name: NF9538_11
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 155 - 473
Target Start/End: Complemental strand, 52390536 - 52390208
Alignment:
| Q |
155 |
gagatttaaacctatatataagannnnnnnnnatttcaattatgtccactataataattgagtaaatctagagaatgacaaacatagagatctatttccg |
254 |
Q |
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| T |
52390536 |
gagatttaaacctatatataagatttttttttatttcaattatgtccactataataattgagtaaatctagagaatgacaaacagagagatctatttccg |
52390437 |
T |
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| Q |
255 |
taatacatgactgtattcttcaggctgcggttgtacatgcaaggatatatcaatgaatgatattatctttccttatcaatattgtactctggaaaaattt |
354 |
Q |
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| T |
52390436 |
taatacatgactgtattcttcaggctgcggttgtacatgcaaggatatatcaatgaatgatattatctttccttatcaatattgtactctggaaaaattt |
52390337 |
T |
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| Q |
355 |
acaatttactagtatataacatgttcacagttgattc----------aaacagttaaaaattatcccaaattttatgacaaacgtgtgatattattcatc |
444 |
Q |
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| T |
52390336 |
acgatttactggtatataacatgttcacagttgattcaaactggatcaaacagttaaaaattatcccaaattttatgacaaacgtgtgatattattcatc |
52390237 |
T |
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| Q |
445 |
tgttgattctgtttgaatcacctcattgt |
473 |
Q |
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| T |
52390236 |
tgttgattctgtttgaatcacctcattgt |
52390208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 52390711 - 52390568
Alignment:
| Q |
9 |
gagaagaatttattacaaaaattaaagcgttgacacaaggagagggacaagttacacacaaattgccctgctccaaatcaactactcctaactaagtcta |
108 |
Q |
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| T |
52390711 |
gagaagaatttattacaaaaattaaagcgttgacacaaggagagggacaagttgcacacaaactgccctgctccaaatcaactactcctaactaagtcta |
52390612 |
T |
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| Q |
109 |
aacacgtgtccgtaatacaagaatttattaccagaagattgatt |
152 |
Q |
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| T |
52390611 |
aacacgtgtccgtaatacaagaatttattaccagaagattgatt |
52390568 |
T |
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