View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9538_13 (Length: 373)
Name: NF9538_13
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_13 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 13879087 - 13878786
Alignment:
| Q |
1 |
caacttaatctgccttctattttgttgcgatccacctttcaaattttgttatattgattgaagcgtacacacataactgcttgatgcattaaatttagag |
100 |
Q |
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| T |
13879087 |
caacttaatctgccttctattttgttgcgatcgacctttcaaattttgttatattgattgaagcgtacacacataactgcttgctgcattaaatttagag |
13878988 |
T |
|
| Q |
101 |
ctgttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttttaattttcaggtgcatgctaaacaaa |
200 |
Q |
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| T |
13878987 |
ctgttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttt------------------taaaccaa |
13878906 |
T |
|
| Q |
201 |
tatatggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttctttttattcatgagctgagggctgaggcttttaa |
300 |
Q |
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| T |
13878905 |
tatatggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttcactttattcatgagctgagggctgaggcttttaa |
13878806 |
T |
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| Q |
301 |
tgtgtgaatgaatcagagta |
320 |
Q |
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| T |
13878805 |
tgtgtgaatgaatcagagta |
13878786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 13874799 - 13874737
Alignment:
| Q |
52 |
tattgattgaagcgtacacacataactgcttgatgcattaaatttagagctgttagaaaagat |
114 |
Q |
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| T |
13874799 |
tattgattgaagcgtacacacataattgcttgctgcattatacttagagctgttagaaaagat |
13874737 |
T |
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