View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9538_14 (Length: 343)
Name: NF9538_14
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_14 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 28603724 - 28604059
Alignment:
| Q |
1 |
caaattcccactaacttgtctagttgctctaagctcaagagcttgagtttaacaggaaacaaactagttggaaagataccaaaggagcttggttatctta |
100 |
Q |
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| T |
28603724 |
caaattccaaccaacttgtctagttgctttagacttaagagcttgagtttaacaggaaacaaactagttggaaagataccaaaggagcttggttatctta |
28603823 |
T |
|
| Q |
101 |
ctaagctagaagttctatctattggtatgaactatttgagtggtgaaatccctgcatctataggaaatctttcatctcttagtgttctcatttttggagt |
200 |
Q |
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| T |
28603824 |
cgaagctagaatttctatctattggtatgaacaatttgagtggtgaaatccctgcatctataggaaatctttcatctcttagtgttctcatttttggaat |
28603923 |
T |
|
| Q |
201 |
caataatttggaaggaaatttacctgaagagataggccatctgaacaatttaacacatatctctattgcatcaaacaaactatatggtatgcttcctttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28603924 |
caataatttggaaggaaatttacctgaagagataggccatctgaaaaatttaacacatatctctattgcatcaaacaaactatatggtatgcttcctttt |
28604023 |
T |
|
| Q |
301 |
acattatttaatatgtcatctctcactttcttctca |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28604024 |
acattatttaatatgtcatctctcactttcttctca |
28604059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 27726149 - 27725829
Alignment:
| Q |
16 |
ttgtctagttgctctaagctcaagagcttgagtttaacaggaaacaaactagttggaaagataccaaaggagcttggttatcttactaagctagaagttc |
115 |
Q |
| |
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||||||| ||| ||| | || |||| |||||| |||||||||||||||| |||||||| ||||| |||||||| | ||| ||||| |||||||| | |
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| T |
27726149 |
ttgtctaattgttctgaactgaagatcttgagcctaacaggaaacaaacttgttggaaaaatacctttagagcttggctttctaactaaactagaagtgc |
27726050 |
T |
|
| Q |
116 |
tatctattggtatgaactatttgagtggtgaaatccctgcatctataggaaatctttcatctcttagtgttctcatttttggagtcaataatttggaagg |
215 |
Q |
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||||||||||||||||| |||||| || ||||||||| ||| |||||||||||||||||| |||||| |||||||||| ||| |||| || || || || |
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| T |
27726049 |
tatctattggtatgaacaatttgacaggagaaatcccttcatttataggaaatctttcatcacttagtattctcattttgggattcaacaacttagaggg |
27725950 |
T |
|
| Q |
216 |
aaatttacctgaagagataggccatctgaacaatttaacacatatctctattgcatcaaacaaactatatggtatgcttccttttacattatttaatatg |
315 |
Q |
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||| | ||||||||||||||| |||| || | ||| || | |||||||||| || | |||||||||| |||||||||||||| || | | | ||| ||| |
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| T |
27725949 |
aaaggtgcctgaagagataggcaatcttaaaagtttgactcgtatctctattacaaccaacaaactatctggtatgcttccttctaaactctataacatg |
27725850 |
T |
|
| Q |
316 |
tcatctctcactttcttctca |
336 |
Q |
| |
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|||| ||||||||| |||||| |
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| T |
27725849 |
tcatatctcactttattctca |
27725829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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