View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9538_2 (Length: 883)
Name: NF9538_2
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_2 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 350 - 802
Target Start/End: Complemental strand, 25514413 - 25513961
Alignment:
| Q |
350 |
tcttcataagattaagacttcagtagattcacatttgcggatcaataaattaatatttttaaaatactatatggtgagagatactttcaatacatgacta |
449 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514413 |
tcttcataagattaagacttcagtagattcacattttcggatcaataaattaatatttttaaaatactatatggtgagagatactttcaatacatgacta |
25514314 |
T |
|
| Q |
450 |
ggaatggttatatatatggtctatggaaacatttttctagtccagcgtgagttaacctctttatttctctctagaatggttatatatatggtctatggat |
549 |
Q |
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| T |
25514313 |
ggaatggttatatatatggtctatgtaaacatttttctagtccagcgtgagttaacctctttatttctctctagaatggttatatatatggtctatggat |
25514214 |
T |
|
| Q |
550 |
acattttttcattgatgtgatgcagtttttgttaattaatttgatgtgtaggactaggaaggagccatggagggcagacaaggaagcatcagttaggatc |
649 |
Q |
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| T |
25514213 |
acattttttcattgatgtgatgcagtttttgttaattaatttgatgtgtaggactaggaaggagccatggagggcagacaaggaagcatcagttaggatc |
25514114 |
T |
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| Q |
650 |
agaagggtatcaagaaatgccctcaaacattgatgaatccatgtttgggaatggctgaaaaaacatacacgttcttagctcaagtcttttctcttttcta |
749 |
Q |
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| T |
25514113 |
agaagggtatcaagaaatgccctcaaacattgatgaatccatgtttgggaatggctgaaaaaacattcacgttcttagctcaagtcttttctcttttcta |
25514014 |
T |
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| Q |
750 |
ttctacttgtttgttcagttgaagctgtagaagtactagtcttttgatgatgt |
802 |
Q |
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| T |
25514013 |
ttctacttgtttgttcagttgaagctgtagaagtactagtcttttgatgatgt |
25513961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 25514719 - 25514410
Alignment:
| Q |
2 |
gttgctgagaacgccgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatctcacacgcacccttatagtatgtttgaatggggtaat |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25514719 |
gttgctgagaacgccgactggcgggccatggcagaggcagcgttgaggttgccggagcgaatctcacacacacccttatagtatgtttgaatggggtaat |
25514620 |
T |
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| Q |
102 |
tgannnnnnnnnaattggtttcgtaaatatctcatgcaatagtttaaaggcatcgtcaatgcgataaaatgttggtttcgttgatgacactattgagctc |
201 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25514619 |
tgatttttttttcattggtttcgtaaatatctcatgcaatagtttaaaggcatcgtcaatgcgataaaatgttggtctcgttgatgacactattgagctc |
25514520 |
T |
|
| Q |
202 |
ttgcatgagatattgaacaaaacgaatctgatgagtttttgttttataataatctcattttctacttttaacttgtcaatttgaataaaacatgcattta |
301 |
Q |
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| T |
25514519 |
tcgcatgagatattgaacaaaacgaatctgatgagtttttgttttataataatctcattttctacttttaacttgtcaatttgaataaaacatgcattta |
25514420 |
T |
|
| Q |
302 |
tcaatgtctt |
311 |
Q |
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|||||||||| |
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| T |
25514419 |
tcaatgtctt |
25514410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 25527693 - 25527755
Alignment:
| Q |
2 |
gttgctgagaacgccgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatc |
64 |
Q |
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| T |
25527693 |
gttgctgagaacgccgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatc |
25527755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 25535722 - 25535784
Alignment:
| Q |
2 |
gttgctgagaacgccgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatc |
64 |
Q |
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| T |
25535722 |
gttgctgagaacgtcgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatc |
25535784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 604 - 664
Target Start/End: Complemental strand, 25523195 - 25523135
Alignment:
| Q |
604 |
taggaaggagccatggagggcagacaaggaagcatcagttaggatcagaagggtatcaaga |
664 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
25523195 |
taggaaggagtcgtggagggcagacaaggaagcagcagttagggtcagaaggatatcaaga |
25523135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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