View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9538_3 (Length: 858)
Name: NF9538_3
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_3 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 2101494 - 2101806
Alignment:
| Q |
11 |
cagagaggtgaatcgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttt |
110 |
Q |
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| T |
2101494 |
cagagaggtgaatcgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgcaaatttggattatgtttcataagcttttaaaaaagttt |
2101593 |
T |
|
| Q |
111 |
tgttttgtaattttcacgttttcatgagcttatagtttatatttaccggcttatatga-ttttttataacctttatcatttttcattctcaattttaacc |
209 |
Q |
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| T |
2101594 |
tgttttgtaattttcacgttttcacgagcttatagtttatatttacaggcttatatgatttttttataacctttatcatttttcattctcaattttaacc |
2101693 |
T |
|
| Q |
210 |
ttgtagctttagttgaactaacttattagacactacacatgttaggtgtgaacacttttacccgatttgaatcttatgtgtc-taagtttttggtggtgt |
308 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2101694 |
ttgtagctttagttgaactaatttattagacactacacatgttaggtgtg-acacttttacccgatttgaatcttatgtgtcttaagtttttggtggtgt |
2101792 |
T |
|
| Q |
309 |
aaccagtgttatta |
322 |
Q |
| |
|
|||||||||||||| |
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| T |
2101793 |
aaccagtgttatta |
2101806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 583 - 858
Target Start/End: Original strand, 2102304 - 2102577
Alignment:
| Q |
583 |
aatgtagccaacactttatgtctctttataggtccatggagtcagccaaggactcgggattgaaacaaataattccgctgaatataatggtctaattttg |
682 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2102304 |
aatgtagctaacactttatgtctctttataggtccatggcgtcagccaaggactcggcattcaaacaaataattccgctgaatataatggtctaattttg |
2102403 |
T |
|
| Q |
683 |
gggctgaaagaagctagcaaccaaggatatgagcatgttcatgtccgaggtgactctcagcttgtctgcaagcaggttagttccccttaatgtgtatgca |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
2102404 |
gggctgaaagaagctagcaaccaaggatatgagcatgttcatgtccgaggtgactctcagcttgtctgcaagcaggttagtt-cccttactgtgtatgca |
2102502 |
T |
|
| Q |
783 |
ctaacctaacttcatttattataactttatcacttaaattgtatctgaatgaattgaataatgataacattaaaag |
858 |
Q |
| |
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||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2102503 |
ttaacctatcttcatgtattataac-ttatcacttaaattgcatctgaatgaattgaataatgataacattaaaag |
2102577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 317 - 541
Target Start/End: Original strand, 2102059 - 2102306
Alignment:
| Q |
317 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatcctctataaggagttgcccgtcatgtttaactc-taaggtttat--- |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
2102059 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatcctctataaggcgttgcccatcatgtttaactcctaaggtttatatc |
2102158 |
T |
|
| Q |
413 |
------------------ctatgaagtaa-cataaacaaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaagg |
493 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102159 |
atgataactctattttatctatgaagtaaacataaacaaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaagg |
2102258 |
T |
|
| Q |
494 |
tctggtgccggagctgttctccgttctgcagatgggagtcgggtgaat |
541 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2102259 |
tctggtgctggagctgttcttcgttctgcagatgggagtcgggtgaat |
2102306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 533
Target Start/End: Original strand, 2106201 - 2106297
Alignment:
| Q |
437 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatgggagtc |
533 |
Q |
| |
|
||||||| |||||| |||||||| |||||||| ||| ||||||| ||||| ||| |||||||||||||| | || ||||||| ||||||||||| |
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| T |
2106201 |
ttgcagctttcttgtatccttgagtttgatggtgcagccagtgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtc |
2106297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 437 - 533
Target Start/End: Original strand, 2097714 - 2097810
Alignment:
| Q |
437 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatgggagtc |
533 |
Q |
| |
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||||||| |||||| |||||||| |||||||| ||| |||| || ||||| ||| |||||||||||||| | || ||||||| ||||||||||| |
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| T |
2097714 |
ttgcagctttcttgtatccttgagtttgatggtgcagccagcgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtc |
2097810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 490
Target Start/End: Original strand, 2041741 - 2041794
Alignment:
| Q |
437 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctgga |
490 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||| || || ||||||||||||||| |
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|
| T |
2041741 |
ttgcagagttcttgtatccttcaatttgatggtgcgtcaagtggaaatcctgga |
2041794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 431 - 767
Target Start/End: Complemental strand, 39183883 - 39183543
Alignment:
| Q |
431 |
aaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatggga |
530 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
39183883 |
aaaatcttgcagcgttcttgtatcctagaatttgatggagcatccagtggaaatcctggaaggtctggtgcaggagctgttctgcgttctgcagatggga |
39183784 |
T |
|
| Q |
531 |
gtcgggtgaatactctatccatcaaatcatttttgcattatacaatatatcaaa------tgtagccaacactttatgtctctttataggtccatggagt |
624 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| | |||||||| |||||||||||||||||||| || |
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| T |
39183783 |
gtcgggtgaatactctatccatcaaatcatttttgcactatacaatatgtcaaagtcaaatgtacctaacacttt--gtctctttataggtccatggcgt |
39183686 |
T |
|
| Q |
625 |
cagccaaggactcgggattgaaacaaataattccgctgaatataatggtctaattttggggctgaaagaagctagcaaccaaggatatgagcatgttcat |
724 |
Q |
| |
|
||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39183685 |
cagccaaggactcggcactcaaacaaataattctgctgaatataatggtctaattttggggctgaatgaagctaggaaccaaggatatgagcatgttcat |
39183586 |
T |
|
| Q |
725 |
gtccgaggtgactctcagcttgtctgcaagcaggttagttccc |
767 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39183585 |
gtccgaggtgactctcagcttgtttgcaagcaggttagttccc |
39183543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 39185054 - 39184928
Alignment:
| Q |
40 |
ttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttttgttttgtaattttcacgttttcatgagc |
139 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
39185054 |
ttatcaatggttaggatctgtttggcaaaccgcaaatttggattatgttttataagcttttaaaagagttttgttttgtaattttcacgttttcaagagc |
39184955 |
T |
|
| Q |
140 |
ttatagtttatatttaccggcttatat |
166 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
39184954 |
ttatagtttatatttaccggcttatat |
39184928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 39184892 - 39184848
Alignment:
| Q |
182 |
ttatcatttttcattctcaattttaaccttgtagctttagttgaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39184892 |
ttatcatttttcattctcaattttaaccttgtagctttaattgaa |
39184848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 39184433 - 39184394
Alignment:
| Q |
283 |
ttatgtgtctaagtttttggtggtgtaaccagtgttatta |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39184433 |
ttatgtgtctaagtttttggtggtgtaactagtgttatta |
39184394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 4952228 - 4952169
Alignment:
| Q |
408 |
tttatctatgaagtaacataaacaaaatcttgcagcgttcttgcatccttgaatttgatg |
467 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4952228 |
tttatttatgagataacataaacaaaatcttgcagcgttcttgtatccttgaatttgatg |
4952169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 639
Target Start/End: Complemental strand, 4952165 - 4952109
Alignment:
| Q |
583 |
aatgtagccaacactttatgtctctttataggtccatggagtcagccaaggactcgg |
639 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4952165 |
aatgtagctaactctttatatctctttataggtccatggcatcagccaaggactcgg |
4952109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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