View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9538_6 (Length: 611)
Name: NF9538_6
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 103 - 534
Target Start/End: Complemental strand, 50454342 - 50453911
Alignment:
| Q |
103 |
aagttgtcaacaaattcatctttttgtatttttcggcattccgatgttcctattaccaatgcaaatatcacaactagtactccaacatacttgtgtaaat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454342 |
aagttgtcaacaaattcatctttttgtatttttcggcattccgatgttcctatcaccaatgcaaatatcacaactagtactccaacatacttgtgtaaat |
50454243 |
T |
|
| Q |
203 |
ttcccatcttaatttgcacaaattaaaacagaaaattgtaatagagctggaaaaacttgatttgctcttgtaatgagaatgcttggcaattggagttcta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454242 |
ttcccatcttaatttgcacaaattaaaacagaaaattgtaatagagctggaaaaacttgatttgctcttgtaatgagaatgcttggcaattggagttcta |
50454143 |
T |
|
| Q |
303 |
tttataagagcacatgccattaatacacaaagacttgggggcatctctcatatagttcttctgactaattacattacatgacctaaatgtcaaacttgtt |
402 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
50454142 |
tttataggagcacatgccattaatacacaaagacttgggggcatctctcatatagttcttctgactagttacattacatgacctaaatgtcaaacttgtt |
50454043 |
T |
|
| Q |
403 |
ggaagacaatctattagccggtgtattcataattgtcatgtcccaaccatcaacaaccttagtctttttcaaatacactattcccgcgcacctagtgaaa |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454042 |
ggaagacaatctattagccggtgtattcataattgtcatgtcccaaccatcaacaaccttagtctttttcaaatacactattcccgcgcacctagtgaaa |
50453943 |
T |
|
| Q |
503 |
actgttagatgagtgtaaaggaatagcgaaat |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
50453942 |
actgttagatgagtgtaaaggaatagcgaaat |
50453911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 600
Target Start/End: Complemental strand, 50453883 - 50453843
Alignment:
| Q |
560 |
tactccatgtgaaaaaatattttactatttgtgatgatgtc |
600 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
50453883 |
tactcaatgtgaaaaaatattttactatttgtgaagatgtc |
50453843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 1184279 - 1184138
Alignment:
| Q |
110 |
caacaaattcatctttttgtatttttcggcattccgatgttcctattaccaatgcaaatatcacaactagtactccaacatacttgtgtaaatttcccat |
209 |
Q |
| |
|
|||| ||||||| || || ||| ||| ||||||| ||||||||||| | ||| || |||| |||| |||||| |||||||| || |||||||| |||| |
|
|
| T |
1184279 |
caactaattcattttcttttatgttttggcattcagatgttcctatcaataataaaattatcgcaacaagtactgcaacatacctgagtaaattttccat |
1184180 |
T |
|
| Q |
210 |
cttaatttgcacaaattaaaacagaaaattgtaatagagctg |
251 |
Q |
| |
|
| ||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
1184179 |
ttaaatttgcacaaattaggacagaaaatagtaatagagctg |
1184138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University