View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9538_7 (Length: 540)
Name: NF9538_7
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_7 |
 | |
|
| [»] chr2 (23 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
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|
Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 23)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 26 - 540
Target Start/End: Original strand, 30383603 - 30384117
Alignment:
| Q |
26 |
cagggaagaattcttatatttggtttggaataaaaccaagggtgactttgacagaacctgagcaaataaaagatgtgttaaacaagatgtctgaattccc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30383603 |
cagggaagaattcttatatttggtttggaataaaaccaagggtgactttgacagaacctgagcaaataaaagatgtgttgaacaagatgtctgaattccc |
30383702 |
T |
|
| Q |
126 |
aaagactaattataagattttcaagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttc |
225 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30383703 |
aaagcctaattacaagattttcaagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttc |
30383802 |
T |
|
| Q |
226 |
catttagaaaagttgaaggttagtgatatatcaagttatagattataagttaatttatatgaatttgactggaaatttgaagtcttgagtcatttcttta |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
30383803 |
catttagaaaagttgaaggttagtgatatatcaagttatagattataagttagtttatatgaatttgactggaaatttgaagtcttaagtcatttcctta |
30383902 |
T |
|
| Q |
326 |
tgaatatacaacagattatgaccccggctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaat |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30383903 |
tgaatatacaacagattatgaccccggctttcttcacaagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaat |
30384002 |
T |
|
| Q |
426 |
agatatatggccttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaa |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30384003 |
agatatatggccttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagctatgaagaaggaaaaagaatatttcaacttcaa |
30384102 |
T |
|
| Q |
526 |
agagagcaagctgaa |
540 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30384103 |
agagagcaagctgaa |
30384117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 289 - 540
Target Start/End: Original strand, 30393997 - 30394246
Alignment:
| Q |
289 |
tttgactggaaatttgaagtcttgagtcatttctttatgaatatacaacagattatgaccccggctttcttcataagttgcaatgatttgattaacaaat |
388 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
30393997 |
tttgactggaaatttgaattttt-agtcatttctttatgaa-atacgacagattatgaccccggctttcttcacaagttgcaatgatatgattagcaaat |
30394094 |
T |
|
| Q |
389 |
gggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaag |
488 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
30394095 |
gggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttggcaagtgatgctatttctcgaactgcgtttggaag |
30394194 |
T |
|
| Q |
489 |
tagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaa |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30394195 |
tagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaa |
30394246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 30393754 - 30393977
Alignment:
| Q |
26 |
cagggaagaattcttatatttggtttggaataaaaccaagggtgactttgacagaacctgagcaaataaaagatgtgttaaacaagatgtctgaattccc |
125 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||| || ||||| |||||||| ||||| |
|
|
| T |
30393754 |
caggaaagaattcttttatttggtttggaataaaaccaaggttaactctcacagaacctgagcaaataaaagatgtattgaacaaaatgtctgacttccc |
30393853 |
T |
|
| Q |
126 |
aaagactaattataagattttcaagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttc |
225 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30393854 |
aaagactaactataagattttcaagttactagctagtggtcttgctagttatgggggagaaaaatggagcaagcatagaaggctaatcaaccctgctttc |
30393953 |
T |
|
| Q |
226 |
catttagaaaagttgaaggttagt |
249 |
Q |
| |
|
||||||||| | |||||||||||| |
|
|
| T |
30393954 |
catttagaacaattgaaggttagt |
30393977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 354 - 540
Target Start/End: Original strand, 30475225 - 30475411
Alignment:
| Q |
354 |
tttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttg |
453 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||| | ||| | ||||||| ||| ||||||||| |
|
|
| T |
30475225 |
tttcttcaaaagttgtgatgatttgattaccaaatgggagagaatgttgtcatcagatggatcatgtgaattggatgtttggcctttccttcaaaatttg |
30475324 |
T |
|
| Q |
454 |
gcaagtgatgctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaa |
540 |
Q |
| |
|
|| ||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30475325 |
gcgagtgatgttatttctagaacagcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaatcgagcaagctgaa |
30475411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 363 - 526
Target Start/End: Original strand, 30424112 - 30424275
Alignment:
| Q |
363 |
aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat |
462 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||| ||||||||||| |||||| |
|
|
| T |
30424112 |
aagttgcgatgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggcgagtgat |
30424211 |
T |
|
| Q |
463 |
gctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaa |
526 |
Q |
| |
|
| |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30424212 |
gttatttctcgagctgcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaa |
30424275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 354 - 540
Target Start/End: Complemental strand, 8380245 - 8380059
Alignment:
| Q |
354 |
tttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttg |
453 |
Q |
| |
|
|||| ||| |||||||| |||| |||||| |||||||||| || |||||| |||||||||||| |||||||||| |||||||||||||| || |||||| |
|
|
| T |
8380245 |
tttcctcacaagttgcattgatatgattagcaaatgggagtcaacgttgtcatcagatggatcaggtgaaatagacatatggccttccctacagaatttg |
8380146 |
T |
|
| Q |
454 |
gcaagtgatgctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaa |
540 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
8380145 |
acaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaa |
8380059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 363 - 540
Target Start/End: Original strand, 30436363 - 30436540
Alignment:
| Q |
363 |
aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat |
462 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||| ||||||||||| |||||| |
|
|
| T |
30436363 |
aagttgcgatgatttgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggccagtgat |
30436462 |
T |
|
| Q |
463 |
gctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaa |
540 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
30436463 |
cttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaa |
30436540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 363 - 540
Target Start/End: Original strand, 30468105 - 30468282
Alignment:
| Q |
363 |
aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat |
462 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||| |||||||| || |||||| |
|
|
| T |
30468105 |
aagttgcgatgatctgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgat |
30468204 |
T |
|
| Q |
463 |
gctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaa |
540 |
Q |
| |
|
| |||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
30468205 |
gttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaa |
30468282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 363 - 540
Target Start/End: Original strand, 30482837 - 30483014
Alignment:
| Q |
363 |
aagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgat |
462 |
Q |
| |
|
||||||||||||| |||||| |||||||||| |||||| || | |||||||||||||||||| ||| ||||||||||| | ||||||||||| |||||| |
|
|
| T |
30482837 |
aagttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgat |
30482936 |
T |
|
| Q |
463 |
gctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaa |
540 |
Q |
| |
|
| |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
30482937 |
gttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaa |
30483014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 371 - 526
Target Start/End: Original strand, 30430153 - 30430308
Alignment:
| Q |
371 |
atgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatgctatttc |
470 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||| |||||||| ||||| |||| |||||| |
|
|
| T |
30430153 |
atgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggaagtatggcctttccttcaaaatttagcaagagatgttatttc |
30430252 |
T |
|
| Q |
471 |
tcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaa |
526 |
Q |
| |
|
|||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30430253 |
tcgagctgcatttggaagtagttatgaagagggaaaaagaatatttcaacttcaaa |
30430308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 338 - 540
Target Start/End: Complemental strand, 23784443 - 23784241
Alignment:
| Q |
338 |
agattatgaccccggctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggcc |
437 |
Q |
| |
|
|||||||||| || | ||||| | ||| |||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||| || ||||||| |
|
|
| T |
23784443 |
agattatgacaccaacattcttgaaaagctgcaatgatttgattagcaattgggaaaaaatgttgtcttcaaatggatcatgtgaaatggacgtatggcc |
23784344 |
T |
|
| Q |
438 |
ttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagct |
537 |
Q |
| |
|
|||||| || | ||| ||||||||| ||| |||| | ||||||||||||||||||||||||||| || | ||||||||||||||| |||||||| | |
|
|
| T |
23784343 |
ttcccttcagagcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggt |
23784244 |
T |
|
| Q |
538 |
gaa |
540 |
Q |
| |
|
||| |
|
|
| T |
23784243 |
gaa |
23784241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 338 - 540
Target Start/End: Original strand, 23767636 - 23767838
Alignment:
| Q |
338 |
agattatgaccccggctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggcc |
437 |
Q |
| |
|
|||||||||| || | ||||| | ||| ||||| |||||||||| ||| ||||| ||| |||||||||| ||||||| | ||||||||| |||||||| |
|
|
| T |
23767636 |
agattatgacaccaacattcttgaaaagctgcaacgatttgattagcaattgggaagaaacgttgtcttcaaatggatcctctgaaatagacatatggcc |
23767735 |
T |
|
| Q |
438 |
ttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagct |
537 |
Q |
| |
|
|||||| || | ||| ||||||||| ||| |||| | ||||||||||||||||||||||||||| || | ||||||||||||||| |||||||| | |
|
|
| T |
23767736 |
ttcccttcagagcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggt |
23767835 |
T |
|
| Q |
538 |
gaa |
540 |
Q |
| |
|
||| |
|
|
| T |
23767836 |
gaa |
23767838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 338 - 540
Target Start/End: Original strand, 23796805 - 23797007
Alignment:
| Q |
338 |
agattatgaccccggctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggcc |
437 |
Q |
| |
|
|||||||||| || | ||||| | ||| ||||| |||||||||| ||| ||||| ||| |||||||||| |||| | | ||||||||| |||||||| |
|
|
| T |
23796805 |
agattatgacaccaacattcttgaaaagctgcaacgatttgattagcaattgggaagaaacgttgtcttcaagtggagcctctgaaatagacatatggcc |
23796904 |
T |
|
| Q |
438 |
ttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagct |
537 |
Q |
| |
|
|||||| || | ||| ||||||||| ||| |||| | ||||||||||||||||||||||||||| || | ||||||||||||||| |||||||| | |
|
|
| T |
23796905 |
ttcccttcagagcttgacaagtgatgttatcgctcgttcgtcatttggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggt |
23797004 |
T |
|
| Q |
538 |
gaa |
540 |
Q |
| |
|
||| |
|
|
| T |
23797005 |
gaa |
23797007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 8381889 - 8381668
Alignment:
| Q |
26 |
cagggaagaattcttatatttggtttggaataaaaccaagggtgactttgacagaacctgagcaaataaaagatgtgttaaacaagatgtctgaattccc |
125 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| || ||||||| ||| | | |||||||| |||| |||||||||||| ||||||| | |||||||| | |
|
|
| T |
8381889 |
cagggaagaatcctttcatttggtctggaacaacaccaaggctgattctcacagaaccagagctaataaaagatgtcttaaacagaacttctgaattaca |
8381790 |
T |
|
| Q |
126 |
aaagactaattataagattttcaagttactagctaatgcacttgctaatt-atgagggagaaaagtggagcaagcatagaaagctaatcaaccctgcttt |
224 |
Q |
| |
|
|||| | || ||| |||||||||| || ||| || || ||| ||||| | ||||||||||||||||| |||||||||| | |||| ||| ||||||| |
|
|
| T |
8381789 |
aaagccaaaatatgagattttcaaatttctatttagtggtctta-taattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgcttt |
8381691 |
T |
|
| Q |
225 |
ccatttagaaaagttgaaggtta |
247 |
Q |
| |
|
||| |||||||| |||||||||| |
|
|
| T |
8381690 |
ccagttagaaaaattgaaggtta |
8381668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 30482149 - 30482222
Alignment:
| Q |
176 |
atgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggttagt |
249 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| || ||||| |||||||||||||| |||||||||||| |
|
|
| T |
30482149 |
atgagggtgaaaagtggagcaagcatagaaagataataaatcctgcattccatttagaaaaattgaaggttagt |
30482222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 30429870 - 30429966
Alignment:
| Q |
148 |
aagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg |
244 |
Q |
| |
|
|||||||||||||||| ||||| | | ||||||||||| ||||||||||||| |||||| | ||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
30429870 |
aagttactagctaatggccttgcaagtcatgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatgtagaaaaattgaagg |
30429966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 23767131 - 23767352
Alignment:
| Q |
26 |
cagggaagaattcttatatttggtttggaataaaaccaagggtgactttgacagaacctgagcaaataaaagatgtgttaaacaagatgtctgaattccc |
125 |
Q |
| |
|
||||||| || |||| |||||||||||||| ||||||| |||||| | | | |||||||||||||||| ||| || || |||||||| ||||| ||||| |
|
|
| T |
23767131 |
cagggaaaaaatcttttatttggtttggaacaaaaccatgggtgattcttaatgaacctgagcaaataagagaagtattcaacaagatatctgagttccc |
23767230 |
T |
|
| Q |
126 |
aaagactaattataagattttcaagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttc |
225 |
Q |
| |
|
|||| | | |||||| || | |||||| || || | |||| ||| || ||||||||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
23767231 |
aaaggttcaatataagtttatgaagttaataactcgcggtcttgttaaactagaaggagaaaagtggaccaagcatagaaggataatcaaccctgctttt |
23767330 |
T |
|
| Q |
226 |
catttagaaaagttgaaggtta |
247 |
Q |
| |
|
|| | ||||| |||||||||| |
|
|
| T |
23767331 |
cacatggaaaaattgaaggtta |
23767352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 30423865 - 30423933
Alignment:
| Q |
176 |
atgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg |
244 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| | ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
30423865 |
atgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatttagaaaaattgaagg |
30423933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 30467860 - 30467927
Alignment:
| Q |
177 |
tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg |
244 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| ||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
30467860 |
tgagggagaacagtggagcaagcacagaaagataatcaatcctgcattccatttagaaaaattgaagg |
30467927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 23784996 - 23784775
Alignment:
| Q |
26 |
cagggaagaattcttatatttggtttggaataaaaccaagggtgactttgacagaacctgagcaaataaaagatgtgttaaacaagatgtctgaattccc |
125 |
Q |
| |
|
||||||| || |||| ||||||||||||||| |||||| |||||| | | | |||||||| ||||||| ||| || || |||||||||||||| ||||| |
|
|
| T |
23784996 |
cagggaaaaagtcttttatttggtttggaatgaaaccatgggtgattctcaatgaacctgaacaaataagagaagtattcaacaagatgtctgagttccc |
23784897 |
T |
|
| Q |
126 |
aaagactaattataagattttcaagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttc |
225 |
Q |
| |
|
|||| | | |||||| || | |||||| || || | |||| ||| || ||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
23784896 |
aaaggttcaatataagtttatgaagttaataactcgcggtcttgttaaactagaaggagaaaagtggagcaagcatagaagaataatcaaccctgcgttt |
23784797 |
T |
|
| Q |
226 |
catttagaaaagttgaaggtta |
247 |
Q |
| |
|
|| | ||||| |||||||||| |
|
|
| T |
23784796 |
cacatggaaaaattgaaggtta |
23784775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 30436070 - 30436138
Alignment:
| Q |
177 |
tgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggt |
245 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |||| || ||||| |||||||||||||| |||||||| |
|
|
| T |
30436070 |
tgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggt |
30436138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 23796324 - 23796515
Alignment:
| Q |
26 |
cagggaagaattcttatatttggtttggaataaaaccaagggtgactttgacagaacctgagcaaataaaagatgtgttaaacaagatgtctgaattccc |
125 |
Q |
| |
|
||||||| || |||| |||||||||||||| ||||||| |||||| | | | |||||||||||||||| ||| || || |||||||| ||||| ||||| |
|
|
| T |
23796324 |
cagggaaaaaatcttttatttggtttggaacaaaaccatgggtgattcttaatgaacctgagcaaataagagaagtattcaacaagatatctgagttccc |
23796423 |
T |
|
| Q |
126 |
aaagactaattataagattttcaagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaacc |
217 |
Q |
| |
|
|||| | | |||||| || | |||||| || || | |||| ||| || ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
23796424 |
aaaggttcaatataagtttatgaagttaataactcgcggtcttgttaaactagaaggagaaaagtggagcaagcatagaaggataatcaacc |
23796515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 30474988 - 30475054
Alignment:
| Q |
178 |
gagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaagg |
244 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| || || || ||| || ||||||| ||||||| |
|
|
| T |
30474988 |
gagggcgaaaagtggagcaagcacagaaagctaattaatccggcattcaatatagaaaaattgaagg |
30475054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 353 - 540
Target Start/End: Complemental strand, 41628513 - 41628326
Alignment:
| Q |
353 |
ctttcttcataagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaattt |
452 |
Q |
| |
|
||||||||| ||||||||| ||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
41628513 |
ctttcttcacaagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagatatatggccttcccttcagaattt |
41628414 |
T |
|
| Q |
453 |
ggcaagtgatgctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaa |
540 |
Q |
| |
|
||| ||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
41628413 |
ggcgagtgatgttatttctcgaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaa |
41628326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 41628945 - 41628725
Alignment:
| Q |
27 |
agggaagaattcttatatttggtttggaataaaaccaagggtgactttgacagaacctgagcaaataaaagatgtgttaaacaagatgtctgaattccca |
126 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||||||||||| | | ||||||||||||||||| | |||||| || ||||| || ||||| || ||| |
|
|
| T |
41628945 |
agggaagaattcttttatgtggtttggaacaaaaccaagggtgattctcacagaacctgagcaaatcatagatgtattgaacaatatctctgactttcca |
41628846 |
T |
|
| Q |
127 |
aagactaattataagattttcaagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttcc |
226 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| || || ||||| | | ||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
41628845 |
aagaataatcataagattttcaagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccccgctttcc |
41628746 |
T |
|
| Q |
227 |
atttagaaaagttgaaggtta |
247 |
Q |
| |
|
||| |||||| |||||||||| |
|
|
| T |
41628745 |
attcagaaaaattgaaggtta |
41628725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 15846242 - 15846083
Alignment:
| Q |
364 |
agttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatg |
463 |
Q |
| |
|
||||||||||| |||| | ||||||| || | | ||||| ||||||||| ||||||| | ||| | ||||||| ||| || |||||| | |||||| |
|
|
| T |
15846242 |
agttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaatttgacctgtgatg |
15846143 |
T |
|
| Q |
464 |
ctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttc |
523 |
Q |
| |
|
|||||| |||| ||||||||||| || |||| ||||||| || |||||||||||||| |
|
|
| T |
15846142 |
taatttctagaacagcatttggaagcagctatgcagaaggagcaaaaatatttcaacttc |
15846083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 15860431 - 15860272
Alignment:
| Q |
364 |
agttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatg |
463 |
Q |
| |
|
||||||||||| |||| | ||||||| || | | ||||| ||||||||| ||||||| || ||| | ||||||||||| || ||||| | |||||| |
|
|
| T |
15860431 |
agttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggccttcccttcagaattttacctgtgatg |
15860332 |
T |
|
| Q |
464 |
ctatttctcgaaccgcatttggaagtagttatgaagaaggaaaaagaatatttcaacttc |
523 |
Q |
| |
|
|||||||| || ||||||||||| || || | |||||||| || | |||||||||||| |
|
|
| T |
15860331 |
taatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttcaacttc |
15860272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 15853034 - 15852912
Alignment:
| Q |
400 |
ttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagttatgaag |
499 |
Q |
| |
|
||||| ||||||||| ||||||| || ||| | ||||||| ||| || |||||| | |||||| |||||||| || ||||||||||| || || | || |
|
|
| T |
15853034 |
ttgtcatcagatggaacatgtgagattgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcag |
15852935 |
T |
|
| Q |
500 |
aaggaaaaagaatatttcaactt |
522 |
Q |
| |
|
|||||| || | ||||||||||| |
|
|
| T |
15852934 |
aaggaacaaaactatttcaactt |
15852912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 526
Target Start/End: Original strand, 11018087 - 11018132
Alignment:
| Q |
481 |
tttggaagtagttatgaagaaggaaaaagaatatttcaacttcaaa |
526 |
Q |
| |
|
||||||||||| | |||||||||||||||| | ||||||||||||| |
|
|
| T |
11018087 |
tttggaagtagctttgaagaaggaaaaagagtttttcaacttcaaa |
11018132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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