View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9538_9 (Length: 492)
Name: NF9538_9
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_9 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 42 - 468
Target Start/End: Original strand, 53491223 - 53491649
Alignment:
| Q |
42 |
aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491223 |
aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa |
53491322 |
T |
|
| Q |
142 |
catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaaca |
241 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491323 |
catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaaca |
53491422 |
T |
|
| Q |
242 |
gttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcgcagttgctttacaagtgtcatagattccttgagtatcaacatcttt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53491423 |
gttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcacagttgctttacaagtgtcatagattccttgagtatcaacatcttt |
53491522 |
T |
|
| Q |
342 |
gtaaggcactggaatcacaatgacttgagtcgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgt |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491523 |
gtaaggcactggaatcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgt |
53491622 |
T |
|
| Q |
442 |
taaaaaagcggacaaaaatataaatgc |
468 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
53491623 |
taaaaaagcggacaaaaatataaatgc |
53491649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 42 - 468
Target Start/End: Original strand, 53498819 - 53499242
Alignment:
| Q |
42 |
aacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaagaatataagagcaacaacaagacaa |
141 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| || |||||||||||||||||||| ||||| |
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|
| T |
53498819 |
aacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtg--agaatataagagcaacaacaggacaa |
53498916 |
T |
|
| Q |
142 |
catagataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaaca |
241 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||||| | |
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|
| T |
53498917 |
catagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttcaggagagta |
53499016 |
T |
|
| Q |
242 |
gttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcgcagttgctttacaagtgtcatagattccttgagtatcaacatcttt |
341 |
Q |
| |
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| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53499017 |
gctatctctagaatctaactcagcacgtatttt-tgcttcacacagcatattcacagttgctttacaagtgtcatagattccttgagtatcaacatcttt |
53499115 |
T |
|
| Q |
342 |
gtaaggcactggaatcacaatgacttgagtcgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgt |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
53499116 |
gtaaggcactggaatcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcgccatgaaccatcaccattgctccaatctgt |
53499215 |
T |
|
| Q |
442 |
taaaaaagcggacaaaaatataaatgc |
468 |
Q |
| |
|
|||| |||||||| ||||||||||||| |
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|
| T |
53499216 |
taaataagcggactaaaatataaatgc |
53499242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 97 - 443
Target Start/End: Original strand, 16069958 - 16070303
Alignment:
| Q |
97 |
aagcaaaatgacatatgtaagaatataagagcaacaacaagacaacatagataacctgcttatttactaaatcctttggcccaatttcaatccttagagg |
196 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| |||| || | ||||||| ||||||||||||||| ||||| ||||| |||||||||||| | ||| ||| |
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|
| T |
16069958 |
aagcataatgacatatgaaagaatacaagtgcaataatataacaacattaataacctgcttatttcctaaaccctttagcccaatttcaaccattaaagg |
16070057 |
T |
|
| Q |
197 |
gacacctttcaattcccaatcagaatacttcctttcaggagaacagttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcgc |
296 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||| ||||| |||||||||||||||||||||| ||||| ||||||| |||||| |||||| ||| | |
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|
| T |
16070058 |
gacacctttcatttcccattcagaatactttctttcaagagaatagttatctctagaatctaactcggcacgaatttttt-cttcacgcaacatcttcac |
16070156 |
T |
|
| Q |
297 |
agttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagtcgatgctactttaggaggtagcacc |
396 |
Q |
| |
|
| ||||||||||| ||||| |||||||| | |||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
16070157 |
ggctgctttacaagcgtcattgattccttcacaatcaacgtttttgtaaggcactggaatcacaatgacttgagttgatgctactttaggcggtagcacc |
16070256 |
T |
|
| Q |
397 |
aatcccttgtcatcaccatgaaccatcaccatcgctccaatctgtta |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16070257 |
aatcccttgtcatcaccatgaaccatcaccatcactccaatctgtta |
16070303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 53516478 - 53516516
Alignment:
| Q |
183 |
tcaatccttagagggacacctttcaattcccaatcagaa |
221 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
53516478 |
tcaatccttagagggacacctttcatttcccattcagaa |
53516516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 150 - 451
Target Start/End: Complemental strand, 45355440 - 45355140
Alignment:
| Q |
150 |
acctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaacagttatctc |
249 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||| |||||| | |||||| |||| | |||||||| |||| |||| |
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|
| T |
45355440 |
acctgcttatttgctaaatccttgggcccgatttcaatccttagaggaacacctttcatttcccactgagaatatttccatccaggagaatagttgtctc |
45355341 |
T |
|
| Q |
250 |
tagaatctaactcagcacgtattttttgcttcacacaacatattcgcagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggca |
349 |
Q |
| |
|
| | |||| |||||||||| ||| | ||||| ||||||||||| ||||||| |||| | ||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
45355340 |
tggcatctgactcagcacgaattcct-gcttccaacaacatattcacagttgcggtacaggcatcaaagattccttgagtatcagcatctttgtaaggca |
45355242 |
T |
|
| Q |
350 |
ctggaatcacaatgacttgagtcgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaag |
449 |
Q |
| |
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| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
45355241 |
caggaatcacaatgacttgaactgatgctactttaggtggcagcaccaatcccttgtcatcaccatgaaccatcaccatcaccccaatctgttgaaaaag |
45355142 |
T |
|
| Q |
450 |
cg |
451 |
Q |
| |
|
|| |
|
|
| T |
45355141 |
cg |
45355140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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