View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9538_low_1 (Length: 381)
Name: NF9538_low_1
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 30871647 - 30871976
Alignment:
| Q |
15 |
acctttgacaaacacaaatctttaaaagtaataaattggaacttgtgaaagttagcagtaactttgcataataagtatatcaaaacaaaaccaaaaa-gt |
113 |
Q |
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| T |
30871647 |
acctttgacaaacacaaatctttaaaagtaataaattggaacttgtgaaagttagcagtaactttgcataataagtatatcaaaacaaaaccaaaaaagt |
30871746 |
T |
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| Q |
114 |
gttgggaagaacaaccgttatgtagcaccaacactttagattgatggtgtgtccacacgacactgacacatgtggttacataacattcaattacttcaat |
213 |
Q |
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| T |
30871747 |
gttg--aagaacaaccgttatgtagcaccaacactttagattgatggtgtgtccacacgacaccgacacatgtggttacataatattcaattacttcaat |
30871844 |
T |
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| Q |
214 |
ttcctaaataattacgagtgtgtgcccggtgtttgtgtcaatgcttcatagacaacacaacatattcaactaccaaaccaaagaggaacatatccatggt |
313 |
Q |
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| T |
30871845 |
ttcctaaataattacgagtgtgtgtccggtgtttgtgtcaataattcatagacaacacaacatattcaactaccaaaccaaagaggaaaatatctatggt |
30871944 |
T |
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| Q |
314 |
aactgattatcaagaaaggagtgaccaaatga |
345 |
Q |
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| T |
30871945 |
aactggttatcaagaaaggagtgaccaaatga |
30871976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 20913522 - 20913557
Alignment:
| Q |
131 |
ttatgtagcaccaacactttagattgatggtgtgtc |
166 |
Q |
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| T |
20913522 |
ttatgtagcaccaacacttcagattgatggtgtgtc |
20913557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 22016101 - 22016065
Alignment:
| Q |
132 |
tatgtagcaccaacactttagattgatggtgtgtcca |
168 |
Q |
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| T |
22016101 |
tatgtagcaccgacactttagattgaaggtgtgtcca |
22016065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 10681099 - 10681063
Alignment:
| Q |
130 |
gttatgtagcaccaacactttagattgatggtgtgtc |
166 |
Q |
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| T |
10681099 |
gttatgtagcaccaacactttagattgaaggtatgtc |
10681063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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