View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9538_low_2 (Length: 282)
Name: NF9538_low_2
Description: NF9538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9538_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 42575452 - 42575708
Alignment:
| Q |
8 |
ataattctgaaaaatgcaatcacaaacaactcaatggaagtcttctataaagaaattatatgcattcacaacaaactattttggtggtaaaaatcatggt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
42575452 |
ataattctgaaaaatgcaatcacaaacaactcaatggaagtcttctataaagaaattatatgcattcacaacaaactgttttgatggtaaaaatcatggt |
42575551 |
T |
|
| Q |
108 |
catgtttgtagacaaatccaaattgatagtagttactttttcaagtaatactggatttatgttaatgtaatagttaaacacaaaatcataaataaaatag |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42575552 |
catgtttgtagacaaatccaaaatgatagtagttactttttcaagtaatactggatttatgttaatgtaatagttaaacacaaaatcataaataaaatag |
42575651 |
T |
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| Q |
208 |
atttgtatgcatgaaaacagaatatacacataatataaatatggatcctaagttata |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42575652 |
atttgtatgcatgaaaacagaatatacacataatataaatatggaccctaagttata |
42575708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 20703182 - 20703406
Alignment:
| Q |
8 |
ataattctgaaaaatgcaatcacaaacaactcaatggaagtcttctataaagaaattatatgcattcacaacaaactattttggtggtaaaaatcatggt |
107 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| || |
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| T |
20703182 |
ataattttgaaaaatgcaattacaaacaactcaatggaagtcttctataaagaaattatatgcattcacaacaaactgttttgatggtaaatatcatagt |
20703281 |
T |
|
| Q |
108 |
catgtttgtagacaaatccaaattgatagtagttactttttcaagtaatactggatttatgttaatgtaatagttaaacacaaaatcataaataaaatag |
207 |
Q |
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|| |||||||||||||||| ||||| | |||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||| |||||||||||| |
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| T |
20703282 |
cagatttgtagacaaatccagattgacaatagttactttttgaagtaatactggatttatattaatgtaatttttaaacgcaaaatcgtaaataaaatag |
20703381 |
T |
|
| Q |
208 |
atttgtatgcatgaaaacagaatat |
232 |
Q |
| |
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|| |||||||||||||||| ||||| |
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| T |
20703382 |
atatgtatgcatgaaaacaaaatat |
20703406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 42574826 - 42574630
Alignment:
| Q |
8 |
ataattctgaaaaatgcaatcacaaacaactcaatggaagtcttctataaagaaattatatgcattcacaacaaactattttggtggtaaaaatcatggt |
107 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| | |||| ||||||| ||||| || |
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| T |
42574826 |
ataattctcaaaaatgcaatcacaaacaactcaatggatgtcttatgtaaagaaattatatgcattcacaacaaattgtttttatggtaaatatcatagt |
42574727 |
T |
|
| Q |
108 |
catgtttgtagacaaatccaaattgatagtagttactttttcaagtaatactggatttatgttaatgtaatagttaaacacaaaatcataaataaaa |
204 |
Q |
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|| |||||||| ||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
42574726 |
cagatttgtagataaatccagattgacagtagttactttttcaagtattactggatttatgctaatgtaatagttaaataccaaatcataaataaaa |
42574630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 42564374 - 42564322
Alignment:
| Q |
213 |
tatgcatgaaaacagaatatacacat-aatataaatatggatcctaagttata |
264 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||| |||||| |||| |
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| T |
42564374 |
tatgcataaaaacagaatatacacataaatataaatatggaccctaagctata |
42564322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 14951305 - 14951563
Alignment:
| Q |
8 |
ataattctgaaaaatgcaatcacaaacaactcaatggaagtcttctataaagaaattatatgcattcacaacaaactattttggtggtaaaaatcatg-g |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||||| |||| | ||||| ||| | | |
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| T |
14951305 |
ataattctgaaaaatgcaatcacaaacacctcaatggaagtcttttataaagaaattctatgcatttacaacaaactcttttcattgtaaatatctttag |
14951404 |
T |
|
| Q |
107 |
tcatgtttgtagacaaatccaaattgatagtagttactttttcaagtaatactggatttatgttaatgtaatagttaaacacaaaatcataaataaaata |
206 |
Q |
| |
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||| ||| |||||||||||| ||||| | ||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||| |
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| T |
14951405 |
tcagatttatagacaaatccagattgacaatagttgctttttcaagtaatactggattaatggtaatgtaatagttaaatgcaaaatcataaactaaata |
14951504 |
T |
|
| Q |
207 |
gatttgtatgcatgaaaacagaatatacac-ataatataaatatggatcctaagttata |
264 |
Q |
| |
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|||||||||||||||||| ||||||||||| | |||||||||||||| |||||| |||| |
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|
| T |
14951505 |
gatttgtatgcatgaaaatagaatatacacaaaaatataaatatggaccctaagctata |
14951563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 14956083 - 14956340
Alignment:
| Q |
9 |
taattctgaaaaatgcaatcacaaacaactcaatggaagtcttctataaagaaattatatgcattcacaacaaactattttggtggtaaaaatcatg-gt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||| |||| |||||||||| |||| | ||||| ||| | || |
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| T |
14956083 |
taattctgaaaaatgcaatcacaaacaactcaatggaagtattctataa-gaagtgatatacatttacaacaaactcttttaattgtaaatatctttagt |
14956181 |
T |
|
| Q |
108 |
catgtttgtagacaaatccaaattgatagtagttactttttcaagtaatactggatttatgtta-atgtaatagttaaacacaaaatcataaataaaata |
206 |
Q |
| |
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|| ||| ||||||||||||||| | | ||| | ||||||||||||||||||||| ||| || |||||||||||||| ||||||||| ||| ||||| |
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| T |
14956182 |
cagatttacagacaaatccaaattcacaataggtgttttttcaagtaatactggattaatgctatatgtaatagttaaatacaaaatcaaaaactaaata |
14956281 |
T |
|
| Q |
207 |
gatttgtatgcatgaaaacagaatatacac-ataatataaatatggatcctaagttata |
264 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||||||||||| |||||| |||| |
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|
| T |
14956282 |
gatttgtatgcatgaaaatagaatatacacaaaaatataaatatggaccctaagctata |
14956340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 14955625 - 14955416
Alignment:
| Q |
8 |
ataattctgaaaaatgcaatcacaaacaactcaatggaagtcttctataaagaaattatatgcattcacaacaaactattttggtggtaaaaatcatggt |
107 |
Q |
| |
|
|||||| ||||||||| |||||||||||| || ||||||||| |||| | ||||| ||||||||||||||||||| | ||||| ||||||| | ||| || |
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|
| T |
14955625 |
ataattttgaaaaatgaaatcacaaacaattccatggaagtcctctagagagaaaatatatgcattcacaacaaattgttttgatggtaaagaccatagt |
14955526 |
T |
|
| Q |
108 |
catgtttgtagacaaatccaaattgatagtagttactttttcaagtaatactggatttatgttaatgtaatagttaaacacaaaatcataaataaaatag |
207 |
Q |
| |
|
||||| |||||||||||||||| | |||| |||||||||||||||| | |||| ||| ||||||||||||||||| || ||||||||||| |
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|
| T |
14955525 |
gggatttgttgacaaatccaaattgacaatagtaactttttcaagtaataatcgattcatgctaatgtaatagttaaactca-------aaataaaatag |
14955433 |
T |
|
| Q |
208 |
atttgtatgcatgaaaa |
224 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
14955432 |
atttgtatgcatgaaaa |
14955416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 80 - 240
Target Start/End: Complemental strand, 10035834 - 10035674
Alignment:
| Q |
80 |
aaactattttggtggtaaaaatcatggtcatgtttgtagacaaatccaaattgatagtagttactttttcaagtaatactggatttatgttaatgtaata |
179 |
Q |
| |
|
||||| ||||| ||||||| || || |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
10035834 |
aaactgttttgatggtaaagataatagtcagatttgtagacaaatccagattgacagtagttactttttcaagtaatactggacttatgctaatgtaata |
10035735 |
T |
|
| Q |
180 |
gttaaacacaaaatcataaataaaatagatttgtatgcatgaaaacagaatatacacataa |
240 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
10035734 |
gttaaacgcaaaatcataaataaaattgatttgtatacattaaaacagaatatacacataa |
10035674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 10035880 - 10035837
Alignment:
| Q |
8 |
ataattctgaaaaatgcaatcacaaacaactcaatggaagtctt |
51 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
10035880 |
ataattctgaaaaatgcaatcgcaaacaactcaatgaaagtctt |
10035837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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