View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9539_high_2 (Length: 247)
Name: NF9539_high_2
Description: NF9539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9539_high_2 |
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| [»] scaffold1572 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 21318913 - 21318686
Alignment:
| Q |
1 |
aacattaaagccttgtaagcttccctggcgggatagatacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccacca |
100 |
Q |
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| T |
21318913 |
aacattaaagccttgtaagcttccctggcgggatagatacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccacca |
21318814 |
T |
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| Q |
101 |
tttctaatctctctttaactcttctcaagaccttttcctcatcatttaagctccctataacacccacctactctcaatttagatataagattgatgaaag |
200 |
Q |
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| T |
21318813 |
tttctaatctctccttaactcttctcaagaccttttcctcatcatttaagctccctataacacccacctactctcaatttagatataagattgatgacag |
21318714 |
T |
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| Q |
201 |
agtttccctatttcatagctgaatcaaa |
228 |
Q |
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| T |
21318713 |
agtttccctatttcatagctgaatcaaa |
21318686 |
T |
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Back To:
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Target: scaffold1572 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 1264 - 1453
Alignment:
| Q |
59 |
tccaaacccatttgtctttctctaaatcattaaattccaccatttct-aatctctctttaactcttctca-------agaccttttcc----tcatcatt |
146 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
1264 |
tccaaacccatttgcattcctctaaatcattaaattccaccatttctaaatctctctttaactcttctcaagagtcgagaccttttccttcttcatcatt |
1363 |
T |
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| Q |
147 |
taagctccct--------ataacacccacctactctcaatttagatataagattgatgaaagagtttccctatttcatagctgaatcaaa |
228 |
Q |
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| T |
1364 |
taagctccctgttcaaacttaacacccacctactcgcaatttagacataagattgatgaccaagtttccctatttcatagctgaatcaaa |
1453 |
T |
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