View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9539_low_10 (Length: 210)

Name: NF9539_low_10
Description: NF9539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9539_low_10
NF9539_low_10
[»] chr7 (3 HSPs)
chr7 (17-110)||(40235351-40235444)
chr7 (143-194)||(40235472-40235524)
chr7 (75-115)||(16971026-16971067)
[»] chr3 (2 HSPs)
chr3 (72-115)||(8174297-8174340)
chr3 (76-115)||(31214665-31214705)
[»] chr4 (1 HSPs)
chr4 (75-115)||(47266182-47266223)
[»] scaffold0350 (1 HSPs)
scaffold0350 (76-115)||(1279-1319)
[»] chr8 (1 HSPs)
chr8 (76-115)||(6038265-6038305)
[»] chr2 (2 HSPs)
chr2 (76-115)||(41939098-41939138)
chr2 (72-108)||(45419851-45419887)
[»] chr1 (1 HSPs)
chr1 (76-115)||(48131218-48131258)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 40235351 - 40235444
Alignment:
Q  17 aggtacgtagaaaattttgattatggtagtattaaattcagttgattatggtaatatatataatatatgtaaggtctggattcaaactccgacc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  40235351 aggtacgtagaaaattttgattatggtagtattaaattcagttgattatgataatatatataatatatgtaaggtctgagttcaaactccgacc 40235444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 40235472 - 40235524
Alignment:
Q  143 aacctcattttatcttaacta-tcaataaaccttgttgttaacttataaccta 194  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  40235472 aacctcattttatcttaactaatcaataagccttgttgttaacttataaccta 40235524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 16971026 - 16971067
Alignment:
Q  75 tataatatatgtaaggtctg-gattcaaactccgaccaccac 115  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  16971026 tataatatatgtaaggtctgagattcaaaccccgaccaccac 16971067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 8174297 - 8174340
Alignment:
Q  72 atatataatatatgtaaggtctggattcaaactccgaccaccac 115  Q
    |||||||||||||| |||||||| |||||||| |||||||||||    
T  8174297 atatataatatatgcaaggtctgaattcaaaccccgaccaccac 8174340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 31214665 - 31214705
Alignment:
Q  76 ataatatatgtaaggtctgg-attcaaactccgaccaccac 115  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  31214665 ataatatatgtaaggtccgggattcaaactccgaccaccac 31214705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 47266182 - 47266223
Alignment:
Q  75 tataatatatgtaaggtct-ggattcaaactccgaccaccac 115  Q
    ||||||||||||||||||| |||||||||| |||||||||||    
T  47266182 tataatatatgtaaggtctaggattcaaaccccgaccaccac 47266223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 1279 - 1319
Alignment:
Q  76 ataatatatgtaaggtctgga-ttcaaactccgaccaccac 115  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  1279 ataatatatgtaaggtctggagttcaaactccggccaccac 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 6038305 - 6038265
Alignment:
Q  76 ataatatatgtaaggtctgga-ttcaaactccgaccaccac 115  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  6038305 ataatatatgtaaggtctggagttcaaactccggccaccac 6038265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 41939138 - 41939098
Alignment:
Q  76 ataatatatgtaaggtctg-gattcaaactccgaccaccac 115  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  41939138 ataatatatgtaaggtttgagattcaaactccgaccaccac 41939098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 45419851 - 45419887
Alignment:
Q  72 atatataatatatgtaaggtctggattcaaactccga 108  Q
    |||||||||||||||||||||| | ||||||||||||    
T  45419851 atatataatatatgtaaggtctaggttcaaactccga 45419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 48131258 - 48131218
Alignment:
Q  76 ataatatatgtaaggtctgga-ttcaaactccgaccaccac 115  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  48131258 ataatatatgtaaggtctggagttcaaactctgaccaccac 48131218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University