View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9539_low_2 (Length: 358)
Name: NF9539_low_2
Description: NF9539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9539_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 27372193 - 27371844
Alignment:
| Q |
1 |
cgcatctccattaattctaacgtttgaactttgaagtcaacaatatattgttatgttattttgaaatttgaagaaatcaaca-------acatcaaatta |
93 |
Q |
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| T |
27372193 |
cgcatctccattaattctaacgtttgaactttgaagtcaacaatatcatgttattttattttgaaatttgaagaaatcaacattcaacaacaccaaatta |
27372094 |
T |
|
| Q |
94 |
ggaatagtagtaaaagtttatggtcattcaactcaaaagtactctaacacc---acacctttacaaatttacatagtagacccaactaccctttaatttc |
190 |
Q |
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| T |
27372093 |
ggaatagtagtaaaagtttatggtcagtcaactcaaaag---tctaacacctcatcacctttacaaatttacctagtacacccacctaccctttaatttc |
27371997 |
T |
|
| Q |
191 |
acgtccatacttcaaataaaattttgtaatggctttgtttccctttgtttgttgtcttattgtcataattgtatcccaagccaaagccttatttgaatgt |
290 |
Q |
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| T |
27371996 |
acgtccatacttcaaacaaaattttgtaatggctctgtatccctttgtttgttgtcttattgtcataattgtatcccaagccaaagccatatttgaatgt |
27371897 |
T |
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| Q |
291 |
gataataacagaggcaactacacagtcaatagcacctacgacaacaaccttaa |
343 |
Q |
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| T |
27371896 |
gataataacagaggaaactacacagtcaatagcacctacgacaacaaccttaa |
27371844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 47764470 - 47764526
Alignment:
| Q |
287 |
atgtgataataacagaggcaactacacagtcaatagcacctacgacaacaaccttaa |
343 |
Q |
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| T |
47764470 |
atgtgataacaacagaggcaattacacagccaatagcacctacgacaacaaccttaa |
47764526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 47772860 - 47772916
Alignment:
| Q |
287 |
atgtgataataacagaggcaactacacagtcaatagcacctacgacaacaaccttaa |
343 |
Q |
| |
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||||||||| |||| ||||||||||||| |||||||||||| |||||||||||||| |
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| T |
47772860 |
atgtgataacaacataggcaactacacatccaatagcacctatgacaacaaccttaa |
47772916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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