View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9539_low_3 (Length: 350)
Name: NF9539_low_3
Description: NF9539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9539_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 2403231 - 2403558
Alignment:
| Q |
8 |
agaagcataggatgaagacattagccaaaaataattaaaaattaaatgacgctggcactgtgatatgattgcaagagaatctgtacttatttttaatata |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2403231 |
agaaacataggatgaagacattagccaaaaataattaaaaattaaatgacgctggcactgtgatatgattgcaagagaatctgtacttatttttaatata |
2403330 |
T |
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| Q |
108 |
tgcaatggatagagagtaaacatttcactcaacctacatacttcaactctacctatgcagtattcaaacatatatttgaagatataaacaacaagcagca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2403331 |
tgcaatggatagagagtaaacatttcactcaacctacatacttcaactctacctatgcagtattcaaacatatatttgaagatataaacaacaagcagca |
2403430 |
T |
|
| Q |
208 |
tctagttaaatcagtaaatgttcactttgtacttcaaagataaatgtgccatcttggtaagtcttccatttagaaatacatcaaattagcccctcattaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2403431 |
tctagttaaatcagtaaatgttcactttgtacttcaaagataaatgtgccatcttggtaagtcttccatttagaaatacatcaaattagcccctcattaa |
2403530 |
T |
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| Q |
308 |
tgcctcatgccatcaaattagttgttac |
335 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2403531 |
tgcctcatgccatcaaattagttgttac |
2403558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 2790373 - 2790099
Alignment:
| Q |
8 |
agaagcataggatgaagacattagccaaaaataattaaaaattaaatgacgctggcactgtgatatgattgcaagagaatctgtacttatttttaatata |
107 |
Q |
| |
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|||| |||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
2790373 |
agaaacataagatcaagacattagccaaaaataaataaaaaataaatgacgctggcactgtgatatgattgcaagaaaatttgtacttatttttaatata |
2790274 |
T |
|
| Q |
108 |
tgcaatggatagagagtaaacatttcactcaacctacatacttcaactctacctatgcagtattcaaacatatatttgaagatataaacaacaagcagca |
207 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
2790273 |
tgcaatggacagaaagtaaacatttcactcaacctacatacttcaactctacctgtgcagtattcaaacagatatttgaagatataaacagcaagcagca |
2790174 |
T |
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| Q |
208 |
tctagttaaatcagtaaatgttcactttgtacttcaaagataaatgtgccatcttggtaagtcttccatttagaaa |
283 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
2790173 |
tctagttaaatcagtaaatgtccactttgaacttcaaagataaacgtgccatc-tggtaagtctttcatttagaaa |
2790099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 4245498 - 4245366
Alignment:
| Q |
129 |
atttcactcaacctacatacttcaactctacctatgcagtattcaaacatatatttgaagata-taaacaacaagcagcatctagttaaatcagtaaatg |
227 |
Q |
| |
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|||| ||||||| ||||||||||| |||||||||||| ||| |||||| |||||| |||||| |||| || | ||||| |||||||||| | ||||| |
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| T |
4245498 |
atttaactcaactaacatacttcaaatctacctatgcaatatgcaaacagatatttaaagatacaaaacgaccaacagcacatagttaaatccgaaaatg |
4245399 |
T |
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| Q |
228 |
ttcactttgtacttcaaagataaatgtgccatc |
260 |
Q |
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| || |||| ||||||||| || ||||| |||| |
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| T |
4245398 |
tccattttggacttcaaaggtatatgtgtcatc |
4245366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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