View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9539_low_4 (Length: 349)

Name: NF9539_low_4
Description: NF9539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9539_low_4
NF9539_low_4
[»] chr4 (5 HSPs)
chr4 (19-282)||(31951719-31951981)
chr4 (17-282)||(55320620-55320884)
chr4 (279-341)||(31951214-31951276)
chr4 (279-341)||(55320076-55320138)
chr4 (240-276)||(31606986-31607022)
[»] chr5 (2 HSPs)
chr5 (279-341)||(2778272-2778334)
chr5 (240-277)||(12632120-12632157)
[»] chr1 (1 HSPs)
chr1 (240-277)||(45290907-45290944)
[»] chr7 (1 HSPs)
chr7 (287-327)||(19055545-19055585)
[»] chr3 (2 HSPs)
chr3 (287-327)||(50807847-50807887)
chr3 (287-327)||(50867991-50868031)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 31951981 - 31951719
Alignment:
Q  19 atattagcctatttggataatacaaattattgcagtcattagatgcttttgaaactctaaagatcctgttaaatgtgtaaaataattagtccacaaaatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||    
T  31951981 atattagcctatttggataatacaaattattgcagtcattagatgcttttgaaaatctaa-gatcctgttaaatgtgtaaaataaatagtccacaaaatt 31951883  T
Q  119 gtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttggaatatatgttcataatctat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31951882 gtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttgaaatatatgttcataatctat 31951783  T
Q  219 atattctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaatttattgat 282  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31951782 atgttctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaatttattgat 31951719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 55320884 - 55320620
Alignment:
Q  17 aaatattagcctatttggataatacaaattattgcagtcattagatgcttttgaaactctaaagatcctgttaaatgtgtaaaataattagtccacaaaa 116  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  55320884 aaatattagcctatttggacaatacaaattattgcagtcattagatgcttttgaaaatctaa-gatcctgttaaatgtgtaaaataaatagtccacaaaa 55320786  T
Q  117 ttgtcacttttgtttgattctattttacttgatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttggaatatatgttcataatct 216  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  55320785 ttgtcactttagtttgattctattttacttgatatctctttatcaaataatttgttgtcattagaatttaggatacctttggaatatatgttcataatct 55320686  T
Q  217 atatattctttgtatggattggcctctaatttattttacaagtgtcgtgaaattaaatttattgat 282  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55320685 atatgttctttgtatggattggcctctaatttattttacaagtgtcatgaaattaaatttattgat 55320620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 31951276 - 31951214
Alignment:
Q  279 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31951276 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct 31951214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 55320138 - 55320076
Alignment:
Q  279 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55320138 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct 55320076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 31606986 - 31607022
Alignment:
Q  240 ctctaatttattttacaagtgtcgtgaaattaaattt 276  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31606986 ctctaatttattttacaagtgtcatgaaattaaattt 31607022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 2778272 - 2778334
Alignment:
Q  279 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgct 341  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  2778272 tgatcttaagttagtggactaaagtgctcaatataatggattagtatttcacctgcctttgct 2778334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 12632157 - 12632120
Alignment:
Q  240 ctctaatttattttacaagtgtcgtgaaattaaattta 277  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  12632157 ctctaatttattttacaagtgtcatgaaattaaattta 12632120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 45290944 - 45290907
Alignment:
Q  240 ctctaatttattttacaagtgtcgtgaaattaaattta 277  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  45290944 ctctaatttattttacaagtgtcatgaaattaaattta 45290907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 19055545 - 19055585
Alignment:
Q  287 agttaggggactaaagtgctcaatataatggattaatattt 327  Q
    |||||| || ||||||||| |||||||||||||||||||||    
T  19055545 agttagtgggctaaagtgcccaatataatggattaatattt 19055585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 50807887 - 50807847
Alignment:
Q  287 agttaggggactaaagtgctcaatataatggattaatattt 327  Q
    |||||| ||| |||||||| |||||||||||||||||||||    
T  50807887 agttagtggaataaagtgcccaatataatggattaatattt 50807847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 50867991 - 50868031
Alignment:
Q  287 agttaggggactaaagtgctcaatataatggattaatattt 327  Q
    |||||| ||| |||||||| |||||||||||||||||||||    
T  50867991 agttagtggaataaagtgcccaatataatggattaatattt 50868031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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