View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9539_low_6 (Length: 274)
Name: NF9539_low_6
Description: NF9539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9539_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 50595078 - 50594819
Alignment:
| Q |
11 |
cataggagttgcatcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccact-gttttcaccaaccacttccaattaac |
109 |
Q |
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| T |
50595078 |
cataggagttgcatcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccacttgttttcaccaaccacttccaattaac |
50594979 |
T |
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| Q |
110 |
acataaaaattatcactaatactcataaccacaagactcttaccacataactaatactattattttaacattaaccatgactacaagcnnnnnnntttca |
209 |
Q |
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| T |
50594978 |
acataaaaattatcactaatactcataaccacaagactcttaccacacaactaatactattattttaacattaaccatgactacaggcaaaaaaaattca |
50594879 |
T |
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| Q |
210 |
tatactatattaagtaattaagtaatacattgttcataacatggataaatccacttatttat |
271 |
Q |
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| T |
50594878 |
tatgc--tattaagtaattaagtaatacattgttcataacatggataaatccacttatttat |
50594819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 1897455 - 1897410
Alignment:
| Q |
225 |
aattaagtaatacattgttcataacatggataaatccacttattta |
270 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1897455 |
aatttagtaatacattgttcataacatggacaaatccacttattta |
1897410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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