View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9539_low_7 (Length: 249)
Name: NF9539_low_7
Description: NF9539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9539_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 46125586 - 46125776
Alignment:
| Q |
16 |
caaaggacgctttacaaataattatgaattagtctacatttattgaataaagaattaagggtagaggctagacattaggctgtttgcacatttttaaaat |
115 |
Q |
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| T |
46125586 |
caaaggacgctttacaaataattatgaattagtctacatttattgaataaagaattaagggtagaggctagacattaggctgtttgcacatttttaaaat |
46125685 |
T |
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| Q |
116 |
taaaactggatttgcttgaaaaaatctggagttatgctaaccaattacctcatccaacagagttagatatgctaatctggaaagactagct |
206 |
Q |
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| T |
46125686 |
taaaactggatttgcttgaaaaaatctggagttatgctaaccaattacctcatccaacagagttagatatgctaatctggaaagactagct |
46125776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 202
Target Start/End: Original strand, 46704413 - 46704559
Alignment:
| Q |
56 |
tattgaataaagaattaagggtagaggctagacattaggctgtttgcacatttttaaaatt-aaaactggatttgcttgaaaaaatctggagttatgcta |
154 |
Q |
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|||||||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||| || |||||||||||||||||| |
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| T |
46704413 |
tattgaataaggaattaagtgtagaggctaaacattaggctgtttgcacatttataaaattaaaaaatggatttgctt-aacaaatctggagttatgcta |
46704511 |
T |
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| Q |
155 |
accaattacctcatccaacagagttagatatgctaatctggaaagact |
202 |
Q |
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| T |
46704512 |
cttaatcatctcatccaacagagttagatatgctaatctggtaagact |
46704559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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