View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9540_high_1 (Length: 545)
Name: NF9540_high_1
Description: NF9540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9540_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Original strand, 19190111 - 19190619
Alignment:
| Q |
19 |
cctccggtgttcctaccggacgaaaaaatggttattctggtggtgggtttggtggaaatggtggttattatggaaataaggataataagtatcatgagag |
118 |
Q |
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| T |
19190111 |
cctccggtgttcctaccggacgaaaaaagggttattctggtggtgggtttggtggaaatggtggttattatggaaataaggataataagtatcatgagag |
19190210 |
T |
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| Q |
119 |
tggttatggacgttatggtggtggtactacaggtggtggttacggtcttgataaccgatctaacagtggttatggaggtggacgttctggtggagctcct |
218 |
Q |
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| T |
19190211 |
tggttatggacgttatggtggtggtactacaggtggtggttacggtcttgataaccgatctaacagtggttatggaggtggacgttctggtggagctact |
19190310 |
T |
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| Q |
219 |
ggtggaggttatggttctaatggtcgttccggtggtggttatgggaataataacgagagcgggtatggaggtggacgttttggtggtggttatggttccg |
318 |
Q |
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| T |
19190311 |
ggtggtggttatggttctaatggtcgttccggtggtggttatgggaataataacgagagcgggtatggaggtggacgttttggtggtggttatggttccg |
19190410 |
T |
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| Q |
319 |
atgaccgttctggtggtggttatggcgctaatgaccgttatgagagtggatatgggcgttctgggggtggatatggtgatggagggcgtacgagtattgg |
418 |
Q |
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| T |
19190411 |
atgaccgttctggtggtggttatggcgctaatgaccgttatgagagtggatatgggcgttctggtggtggatatggtgatggagggcgttcgagtattgg |
19190510 |
T |
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| Q |
419 |
tggatatggcgaagaaaaccgttctagtggtggctatggatatggagggcgttctagtggttacggtaatgagcaaagttttggagggtatggtagggat |
518 |
Q |
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| T |
19190511 |
tggatatggcgaagaaaaccgttctagtggtggctatggatatggagggcgttctagtggttacggtaatgagcaaagttttggagggtatggtagggat |
19190610 |
T |
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| Q |
519 |
ggtcgtgat |
527 |
Q |
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| T |
19190611 |
ggtcgtgat |
19190619 |
T |
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