View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9540_high_3 (Length: 229)
Name: NF9540_high_3
Description: NF9540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9540_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 25703065 - 25702907
Alignment:
| Q |
73 |
aatgcacgatccatacagcaacaaacagttccaccaaaagcttttcccactaggtgggataagctacatacataaatcaaacgaggtcgaattgtt--at |
170 |
Q |
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| T |
25703065 |
aatgcatgatccttacaacaacaaacagttacaccagaagcttttcctactaggtgggataaactacatgcataaatcaaatgaggtcaaattgttttat |
25702966 |
T |
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| Q |
171 |
cgttttctaggcctccctctagtgttaatcttctgtacagatattctaatcaatctcgt |
229 |
Q |
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| T |
25702965 |
cgttttctaggcctccctctagtgttaatcttctgtacagatattctaatcaatctcgt |
25702907 |
T |
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