View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9540_low_1 (Length: 611)
Name: NF9540_low_1
Description: NF9540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9540_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 72 - 493
Target Start/End: Original strand, 4712246 - 4712679
Alignment:
| Q |
72 |
actaatgatgaggtttctcaaacctctacgccaccaacaccaacacctttctccagctatcataaactatacgtatacgcaatcatatacatatatgtat |
171 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712246 |
actaacgacgaggtttctcaaacctctacgccaccaacaccaacacctttctccagctatcataaactatacgtatacgcaatcatatacatatatgtat |
4712345 |
T |
|
| Q |
172 |
ttgcatgtgtatgtttttcctcaaattcccgggaatcaataagctttaagaacaagatcattgacaacttatactactaatgtatat----ctcttattg |
267 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4712346 |
ttgcatgtgtatttttttcctcaaattcccgggaatcaataagctttaagaacaagatcattgacaacttatactactaatgtatatatatctcttattg |
4712445 |
T |
|
| Q |
268 |
ataaagatttaaannnnnnn------gtaagaaaagtggaacatgtgttacatatatgtattatttgcattatatggaaacaagcatttttgtttttgta |
361 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712446 |
ataaagatttattgttttttttttttgtaagaaaagtggaacatgtgttacatatatgtattatttgcattatatggaaacaagcatttttgtttttgta |
4712545 |
T |
|
| Q |
362 |
attaatttgagtaagcgcagttcaaatgataaaaagttgcgagacatttgatatgtagaagcgcaaattctaatcaacaatgttcaagttcttcacattt |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712546 |
attaatttgagtaagcgcagttcaaatgataaaaagttgcgagacatttgatatgtagaagcgcaaattctaatcaacaatgttcaagttcttcacattt |
4712645 |
T |
|
| Q |
462 |
a--gtgtgtgagtttagttaccggactatttgcc |
493 |
Q |
| |
|
| |||||||||||||||||||| |||||||||| |
|
|
| T |
4712646 |
agtgtgtgtgagtttagttaccgaactatttgcc |
4712679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 4712192 - 4712228
Alignment:
| Q |
17 |
aaacacaaccgagtcattcatgaatttataattaacc |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712192 |
aaacacaaccgagtcattcatgaatttataattaacc |
4712228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University