View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9540_low_13 (Length: 215)

Name: NF9540_low_13
Description: NF9540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9540_low_13
NF9540_low_13
[»] chr5 (15 HSPs)
chr5 (2-198)||(13519422-13519625)
chr5 (7-141)||(10736911-10737045)
chr5 (46-141)||(10735772-10735867)
chr5 (46-115)||(11797545-11797614)
chr5 (12-141)||(1103946-1104075)
chr5 (68-141)||(1102627-1102700)
chr5 (160-201)||(13554189-13554230)
chr5 (149-201)||(13547681-13547732)
chr5 (53-123)||(4124784-4124854)
chr5 (71-141)||(35081474-35081544)
chr5 (69-141)||(28702578-28702650)
chr5 (46-122)||(35047447-35047523)
chr5 (71-124)||(4127290-4127343)
chr5 (2-115)||(11796604-11796716)
chr5 (46-139)||(41144530-41144623)
[»] chr1 (15 HSPs)
chr1 (7-141)||(48528870-48529004)
chr1 (46-141)||(7306267-7306362)
chr1 (47-141)||(26287797-26287891)
chr1 (69-139)||(48527545-48527615)
chr1 (2-115)||(40533572-40533685)
chr1 (17-115)||(12667258-12667356)
chr1 (68-141)||(26286421-26286494)
chr1 (68-141)||(5613119-5613192)
chr1 (13-114)||(51446822-51446923)
chr1 (61-137)||(7304825-7304901)
chr1 (46-109)||(12665832-12665895)
chr1 (68-125)||(5611751-5611808)
chr1 (2-115)||(14479483-14479596)
chr1 (2-115)||(28051576-28051688)
chr1 (14-50)||(32459577-32459613)
[»] chr7 (10 HSPs)
chr7 (13-142)||(43442742-43442871)
chr7 (13-124)||(35296797-35296908)
chr7 (7-141)||(10955854-10955988)
chr7 (69-141)||(10957189-10957261)
chr7 (61-115)||(35295734-35295788)
chr7 (46-115)||(669400-669469)
chr7 (69-141)||(26135650-26135722)
chr7 (13-108)||(44376667-44376762)
chr7 (13-108)||(44385534-44385629)
chr7 (17-99)||(666777-666859)
[»] chr4 (14 HSPs)
chr4 (13-141)||(36846539-36846666)
chr4 (13-116)||(52137460-52137563)
chr4 (13-141)||(26631198-26631326)
chr4 (47-141)||(1521207-1521301)
chr4 (7-141)||(35348806-35348940)
chr4 (2-115)||(8363357-8363470)
chr4 (52-115)||(26491452-26491515)
chr4 (68-141)||(1519820-1519893)
chr4 (15-108)||(44499965-44500058)
chr4 (47-141)||(39056434-39056528)
chr4 (68-117)||(26629824-26629873)
chr4 (2-82)||(26495190-26495270)
chr4 (69-141)||(35350143-35350215)
chr4 (69-141)||(39057802-39057874)
[»] scaffold0219 (2 HSPs)
scaffold0219 (40-142)||(8196-8298)
scaffold0219 (13-116)||(6929-7031)
[»] chr3 (6 HSPs)
chr3 (46-140)||(37416450-37416544)
chr3 (46-141)||(37415004-37415099)
chr3 (46-115)||(14745212-14745281)
chr3 (13-65)||(14744148-14744200)
chr3 (2-55)||(20486100-20486153)
chr3 (68-125)||(7270348-7270405)
[»] chr8 (11 HSPs)
chr8 (47-124)||(31844394-31844471)
chr8 (13-124)||(43203259-43203370)
chr8 (71-141)||(24306162-24306232)
chr8 (46-140)||(38697878-38697972)
chr8 (2-115)||(42793734-42793847)
chr8 (68-141)||(43202105-43202178)
chr8 (68-117)||(31845828-31845877)
chr8 (47-115)||(28291330-28291398)
chr8 (69-138)||(17455059-17455128)
chr8 (13-125)||(10667994-10668106)
chr8 (13-125)||(24191402-24191514)
[»] chr2 (8 HSPs)
chr2 (61-139)||(1309409-1309487)
chr2 (1-115)||(19397565-19397679)
chr2 (2-115)||(28610057-28610170)
chr2 (48-140)||(19398814-19398906)
chr2 (61-124)||(1310695-1310758)
chr2 (69-141)||(1147758-1147830)
chr2 (69-141)||(1149223-1149295)
chr2 (92-138)||(102414-102460)
[»] scaffold0148 (1 HSPs)
scaffold0148 (14-51)||(15832-15869)
[»] chr6 (7 HSPs)
chr6 (69-141)||(136636-136708)
chr6 (69-141)||(30231487-30231559)
chr6 (61-139)||(11968504-11968582)
chr6 (69-141)||(138241-138313)
chr6 (69-141)||(146262-146334)
chr6 (46-90)||(11724738-11724782)
chr6 (69-141)||(30232941-30233013)
[»] scaffold0114 (1 HSPs)
scaffold0114 (2-115)||(38575-38688)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 13519625 - 13519422
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaa-----cggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagtt 96  Q
    |||| ||||||||||||||||||||||||||     |||||  |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  13519625 atatcaaaagttttagacattaaaaaactaaactaacggaagggatcaatttgacaaacggagcaaaacaagaaggaccaaaatgttgatttttcgagtt 13519526  T
Q  97 atgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt----tgaagcctatatcatatgcatccatttatctggagacgggaggtaatccac 192  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    | ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13519525 atgggactaaaatgtaaacaagaaattagttagggaac-aaaagtccaattaagcctatatcatat-catccatttatctggagacgggaggtaatccac 13519428  T
Q  193 tttgaa 198  Q
    ||||||    
T  13519427 tttgaa 13519422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 10736911 - 10737045
Alignment:
Q  7 aaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaa 106  Q
    |||| ||||||||||||||||  |||||||   || ||| ||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||    
T  10736911 aaaaattttagacattaaaaagttaacggaggggaccaaattgattaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaa 10737010  T
Q  107 aatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||| |||||||||||||  ||||| |||||||||    
T  10737011 aatgaaaacaagaaattacttaggggaccaaaagt 10737045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 10735867 - 10735772
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||| |||||  ||||| |||||||||    
T  10735867 tttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaagtaattacttaggggaccaaaagt 10735772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 11797545 - 11797614
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaac 115  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||    
T  11797545 tttgactaacggagaaaaacaagagggaccaaaatgttgattttacgagttatgagaccaaaatgtaaac 11797614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 1103946 - 1104075
Alignment:
Q  12 ttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgt 111  Q
    ||||||| |||| ||||||||||||   || |||  || | ||| ||| ||||||||||| ||  ||||||||||||| |||||||||||||||||||||    
T  1103946 ttttagatattataaaactaacggaggggaccaaactggctaacagagaaaaacaagaggaactgaaatgttgattttacgagttatgggactaaaatgt 1104045  T
Q  112 aaacaagaaattaggtagggaaccaaaagt 141  Q
     ||||| ||||||  ||||| |||||||||    
T  1104046 taacaacaaattacttaggggaccaaaagt 1104075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 1102700 - 1102627
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||||| ||||||||||||| ||||||||||||| || |||||||||| ||||||| || || |||||||||    
T  1102700 gagggacctaaatgttgattttacgagttatgggaccaatatgtaaacaacaaattagttatgggaccaaaagt 1102627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 13554230 - 13554189
Alignment:
Q  160 catccatttatctggagacgggaggtaatccactttgaagtg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13554230 catccatttatctggagacgggaggtaatccactttgaagtg 13554189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 13547732 - 13547681
Alignment:
Q  149 tatatcatatgcatccatttatctggagacgggaggtaatccactttgaagtg 201  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  13547732 tatatcatat-catccatttatatggagactggaggtaatccactttgaagtg 13547681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 4124854 - 4124784
Alignment:
Q  53 aacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaatt 123  Q
    ||||||| ||||||| ||||||||||| |||||||||  || |||||| || |||||| ||||||||||||    
T  4124854 aacggagcaaaacaaaagggaccaaaacgttgattttatgaattatggaaccaaaatgaaaacaagaaatt 4124784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 35081474 - 35081544
Alignment:
Q  71 ggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||| ||||||||| ||||||||||||| |||||| ||||||  |||||  ||||| |||||||||    
T  35081474 ggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaaacaattacttaggggaccaaaagt 35081544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 28702650 - 28702578
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| ||| ||||| ||||||||||||| |||||| |||||| ||||||  ||||| || ||||||    
T  28702650 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggacaaaaagt 28702578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 35047523 - 35047447
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaat 122  Q
    |||||| ||||||| ||||||| ||||||   || ||||||||| ||||||||||||| |||||| ||||| |||||    
T  35047523 tttgactaacggagcaaaacaaaagggacttgaacgttgattttacgagttatgggaccaaaatgaaaacacgaaat 35047447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 4127290 - 4127343
Alignment:
Q  71 ggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaatta 124  Q
    ||||||||| ||| ||||| ||||||||||||| |||||| |||||| ||||||    
T  4127290 ggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaatta 4127343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 11796716 - 11796604
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatggg 101  Q
    |||| |||||||||| |||||||||||||| ||||   ||||||||||||  | |||| ||||| | |||||||||||| |   |||| | | |||||||    
T  11796716 atatcaaaagttttaaacattaaaaaactagcggatgggatcaatttgactgagggagcaaaacca-agggaccaaaatatgagttttacaatttatggg 11796618  T
Q  102 actaaaatgtaaac 115  Q
    || |||||||||||    
T  11796617 accaaaatgtaaac 11796604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 41144530 - 41144623
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaa 139  Q
    |||||| ||||||| ||||  | ||||||||||| |||||||||   | ||||||||| |||||| |||||| ||||||  ||||| |||||||    
T  41144530 tttgactaacggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaattaattaggggaccaaaa 41144623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 48528870 - 48529004
Alignment:
Q  7 aaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaa 106  Q
    |||||||||||| |||||||||||||||||   || ||| ||||| ||||||| |||| ||||||||| |||||||||||||| ||||||||||||| ||    
T  48528870 aaaagttttagatattaaaaaactaacggatgggaccaaattgactaacggagaaaaataagagggactaaaatgttgattttacgagttatgggaccaa 48528969  T
Q  107 aatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| ||||||  | ||| |||||||||    
T  48528970 aatgtaaacaacaaattacttgggggaccaaaagt 48529004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 7306267 - 7306362
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||| ||| ||| ||||||||||||||||||||||| ||||| |||||||| |||| |||||| |||||| ||||||  || ||||||||||||    
T  7306267 tttgactaacagaggaaaacaagagggaccaaaatgttaattttacgagttataggaccaaaatgaaaacaacaaattacttaaggaaccaaaagt 7306362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 26287797 - 26287891
Alignment:
Q  47 ttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||| ||||||||||||   |||||||||||||||||||||| ||| ||||||||| |||||| |||||| ||||||| ||| | |||||||||    
T  26287797 ttgactaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggaccaaaatgaaaacaacaaattagttagaggaccaaaagt 26287891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 48527615 - 48527545
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaa 139  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||  ||||| |||||||    
T  48527615 agggaccaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattacttaggggaccaaaa 48527545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 40533572 - 40533685
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatggg 101  Q
    |||| |||||||||||||||||||||| |||||||   || |  |||||| ||||||| ||| | |||||||||||||||||| |||| | | ||||||     
T  40533572 atatcaaaagttttagacattaaaaaattaacggaggggacctttttgactaacggagcaaagcgagagggaccaaaatgttggttttacaatttatgga 40533671  T
Q  102 actaaaatgtaaac 115  Q
    || |||||||||||    
T  40533672 accaaaatgtaaac 40533685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 12667258 - 12667356
Alignment:
Q  17 gacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaac 115  Q
    ||||||||||||||||||||   || ||| ||||| ||||||| ||||||||||||||| ||||||| ||||| ||| || | |||| |||||| ||||    
T  12667258 gacattaaaaaactaacggaggggaccaagttgactaacggagcaaaacaagagggaccgaaatgttaattttacgaattctaggaccaaaatgaaaac 12667356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 26286494 - 26286421
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||||||| ||||||||||| ||| ||||||||| |||||| |||| | ||||||| ||||| |||||||||    
T  26286494 gagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagt 26286421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 5613119 - 5613192
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||||||| ||||||||||| ||| ||||||||| |||||| |||| | ||||||| ||||| | |||||||    
T  5613119 gagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggatcaaaagt 5613192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 51446822 - 51446923
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    |||||| |||||||||||||||||   ||||||||||||  |||||| ||||| |  ||||||||||||| | |||| | | ||||| ||| ||||||||    
T  51446822 tttagatattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgggttttacaatttatgtgaccaaaatgta 51446921  T
Q  113 aa 114  Q
    ||    
T  51446922 aa 51446923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 7304901 - 7304825
Alignment:
Q  61 aaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaa 137  Q
    |||| ||||||||||||||| |||||||| ||||||||||||  | |||| |||||| ||||||  | |||||||||    
T  7304901 aaaataagagggaccaaaatattgattttacgagttatgggatcacaatgaaaacaacaaattatttcgggaaccaa 7304825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 12665895 - 12665832
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaat 109  Q
    |||||| |||| || |||| |||||||||| ||||||||||||| ||| ||||||||| |||||    
T  12665895 tttgactaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaat 12665832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 5611808 - 5611751
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattag 125  Q
    |||| ||||||||||||||||| | | ||||||||| |||||| |||||| |||||||    
T  5611808 gaggcaccaaaatgttgattttacaaattatgggaccaaaatgaaaacaacaaattag 5611751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 14479483 - 14479596
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatggg 101  Q
    |||| |||| |||||  ||||||||||||||||||   ||||||||||||  | |||| ||||| |  |||||||||||||   |||| | | |||||||    
T  14479483 atatcaaaaattttaatcattaaaaaactaacggaggggatcaatttgactgatggagcaaaaccaaggggaccaaaatgtgagttttacaatttatggg 14479582  T
Q  102 actaaaatgtaaac 115  Q
    || |||||||||||    
T  14479583 accaaaatgtaaac 14479596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 28051576 - 28051688
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatg-atcaatttgacaaacggagtaaaa-caagagggaccaaaatgttgatttttcgagttatg 99  Q
    |||| |||| ||||| ||||||||||| ||||||  ||| ||||||||||| ||||||| |||| |||| |||||||||||||   |||| | | |||||    
T  28051576 atatcaaaaattttaaacattaaaaaattaacgg--atgaatcaatttgactaacggagcaaaatcaag-gggaccaaaatgtgagttttacaatttatg 28051672  T
Q  100 ggactaaaatgtaaac 115  Q
    |||| |||||||||||    
T  28051673 ggaccaaaatgtaaac 28051688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 32459577 - 32459613
Alignment:
Q  14 ttagacattaaaaaactaacggaaatgatcaatttga 50  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  32459577 ttagacattaaaaaactaacagaaatcatcaatttga 32459613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 43442742 - 43442871
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    |||||||||||||| |||||||||   || ||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||| |    
T  43442742 tttagacattaaaagactaacggaggggaccaaattgactaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaatatgaa 43442841  T
Q  113 aacaagaaattaggtagggaaccaaaagtt 142  Q
    ||||| ||||||  ||||| ||||||||||    
T  43442842 aacaacaaattacttaggggaccaaaagtt 43442871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 35296797 - 35296908
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||| ||||| |  || ||||||||||   |||| | | |||| |||| ||||||||    
T  35296797 tttagacattaaaaaattaacggagatgatcaatttgactaacggagcaaaaccaagggtaccaaaatgtgagttttacaatttataggaccaaaatgta 35296896  T
Q  113 aacaagaaatta 124  Q
    ||| | ||||||    
T  35296897 aactacaaatta 35296908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 10955988 - 10955854
Alignment:
Q  7 aaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaa 106  Q
    |||| |||||||||||||||| ||||||||   ||  || ||||| ||||||| |||||||||||||| |||| |||||||||   |||||||| |  ||    
T  10955988 aaaaattttagacattaaaaatctaacggaggggactaaattgactaacggagcaaaacaagagggactaaaacgttgattttataagttatggaatcaa 10955889  T
Q  107 aatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||| |||||| ||||||  || || |||||||||    
T  10955888 aatgaaaacaacaaattacttaagggaccaaaagt 10955854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 10957189 - 10957261
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| ||| ||||| ||||||||||||| |||||| |||||| ||||||  ||||| |||||||||    
T  10957189 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggaccaaaagt 10957261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 35295788 - 35295734
Alignment:
Q  61 aaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaac 115  Q
    |||||||||||||| |||| ||||| ||| ||||||||||||| |||||||||||    
T  35295788 aaaacaagagggactaaaacgttgactttacgagttatgggaccaaaatgtaaac 35295734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 669400 - 669469
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaac 115  Q
    ||||||||||| || |||| || ||||||| ||||||||||||| ||| ||||||||| |||||| ||||    
T  669400 tttgacaaacgaagcaaaataaaagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaac 669469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 26135722 - 26135650
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| |||||||||   ||||||||||| |||||| |||||  ||||||| ||||| |||||||||    
T  26135722 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagt 26135650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 44376667 - 44376762
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaa 108  Q
    ||||||||||||||||||||||||   ||| |||||||| || |||| ||||    ||||||||||||| |||||||   ||||||||||| ||||    
T  44376667 tttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatgattttaaaagttatgggaccaaaa 44376762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 44385534 - 44385629
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaa 108  Q
    ||||||||||||||||||||||||   ||| |||||||| || |||| ||||    ||||||||||||| |||||||   ||||||||||| ||||    
T  44385534 tttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatgattttaaaagttatgggaccaaaa 44385629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 666859 - 666777
Alignment:
Q  17 gacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatg 99  Q
    |||||||||| |||||||||   || ||| ||||| ||||||| ||||||||||||||| |||| || |||||  ||||||||    
T  666859 gacattaaaatactaacggaggggaccaaattgactaacggagcaaaacaagagggaccgaaatattaattttatgagttatg 666777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 36846539 - 36846666
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    |||||||||||||| ||||||||||  || ||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |    
T  36846539 tttagacattaaaa-actaacggaagggaccaaattgacgaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaa 36846637  T
Q  113 aacaagaaattaggtagggaaccaaaagt 141  Q
    ||||| ||||||  |||||  ||||||||    
T  36846638 aacaacaaattacttagggggccaaaagt 36846666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 52137563 - 52137460
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaac-aagagggaccaaaatgttgatttttcgagttatgggactaaaatgt 111  Q
    |||||||||| ||||||||||||| ||||| ||||||||  |||||||||||| |||||| |||||||||||| |||| | | ||||||||| |||||||    
T  52137563 tttagacattgaaaaactaacggagatgatgaatttgaccgacggagtaaaaccaagagg-accaaaatgttggttttacaatttatgggaccaaaatgt 52137465  T
Q  112 aaaca 116  Q
    |||||    
T  52137464 aaaca 52137460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 26631198 - 26631326
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    |||||||||||||  || ||||||   || ||| ||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| |||||| |    
T  26631198 tttagacattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatgaa 26631297  T
Q  113 aacaagaaattaggtagggaaccaaaagt 141  Q
    || || ||||||  | ||| |||||||||    
T  26631298 aataacaaattacttgggggaccaaaagt 26631326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 1521207 - 1521301
Alignment:
Q  47 ttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||| ||||||||||||   |||||||||||||||||||||| ||| ||||||||  |||||| |||||| ||||||| ||| | |||||||||    
T  1521207 ttgactaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggatcaaaatgaaaacaacaaattagttagaggaccaaaagt 1521301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 35348940 - 35348806
Alignment:
Q  7 aaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaa 106  Q
    |||| |||||||||||||||| ||||||||   ||  || |||||  ||| || |||||||||||||| |||| ||||||||| | ||||||||||| ||    
T  35348940 aaaaattttagacattaaaaagctaacggaggggactaaattgactgacgaagcaaaacaagagggactaaaacgttgattttacaagttatgggaccaa 35348841  T
Q  107 aatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||| |||||| ||||||  || || |||||||||    
T  35348840 aatgaaaacaacaaattacttaagggaccaaaagt 35348806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 8363357 - 8363470
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatggg 101  Q
    |||| |||| ||||| |||||||||||||||||||   |||||||||||| ||||||| ||||| | ||||||||||||||   |||| | | |||| ||    
T  8363357 atatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttatagg 8363456  T
Q  102 actaaaatgtaaac 115  Q
    || |||||||||||    
T  8363457 accaaaatgtaaac 8363470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 26491515 - 26491452
Alignment:
Q  52 aaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaac 115  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||| ||| ||||| |||||    
T  26491515 aaacggagcaaaataagagggaccaaaatgttgattttacgagttatgagaccaaaatataaac 26491452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 1519893 - 1519820
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||||||| ||||||||||| ||| ||||||||| |||||| |||| | ||||||| ||||| |||||||||    
T  1519893 gagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagt 1519820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 44499965 - 44500058
Alignment:
Q  15 tagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaa 108  Q
    |||||||||| |||||||||||   |||||||||||| ||||||| ||||    ||||||||||||| |||||||  |||||||||||| ||||    
T  44499965 tagacattaacaaactaacggagtggatcaatttgactaacggagcaaaagttaagggaccaaaatgatgattttaagagttatgggaccaaaa 44500058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 39056528 - 39056434
Alignment:
Q  47 ttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||| | | ||||| ||| |||||| |||||| ||||||  || || |||||||||    
T  39056528 ttgactaacggagcaaaacaagagggactaaaacgttgattttacaaattatgagaccaaaatgaaaacaacaaattacttaagggaccaaaagt 39056434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 26629873 - 26629824
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaa 117  Q
    ||||||||||||||||||||||  |||||||||||| |||||| ||||||    
T  26629873 gagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaa 26629824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 26495270 - 26495190
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgt 82  Q
    |||| |||| ||||| |||||||||||||||||||   ||||||||||||  |||||| ||||| |  |||||||||||||    
T  26495270 atatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggaccaaaatgt 26495190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 35350143 - 35350215
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| ||| ||||| ||||||||| ||  |||||| |||||| ||||||  ||||| |||||||||    
T  35350143 agggaccaaaacgttaattttacgagttatgagatcaaaatgaaaacaacaaattacttaggggaccaaaagt 35350215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 39057802 - 39057874
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| ||| ||||| |||||||| |||| |||||  |||||| ||||||  ||||| |||||||||    
T  39057802 agggaccaaaacgttaattttacgagttataggacaaaaataaaaacaacaaattacttaggggaccaaaagt 39057874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 8196 - 8298
Alignment:
Q  40 gatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaa 139  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||  |||||  ||||| |||||||    
T  8196 gatcaaattgactaacggagtaaaacgagagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggaccaaaa 8295  T
Q  140 gtt 142  Q
    |||    
T  8296 gtt 8298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 7031 - 6929
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    |||||| ||| |||||||||||||   ||||||||||||  |||||| ||||| | ||| |||||||||||| |||| | | ||||||||| ||||||||    
T  7031 tttagatattgaaaaactaacggagg-gatcaatttgaccgacggagcaaaaccaaaggaaccaaaatgttggttttacaatttatgggaccaaaatgta 6933  T
Q  113 aaca 116  Q
    ||||    
T  6932 aaca 6929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 37416450 - 37416544
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaag 140  Q
    |||||| ||||||| |||||||||||||||||||||||||||||  ||||||||| || |||||| |||||| ||||||  ||||| ||||||||    
T  37416450 tttgactaacggagcaaaacaagagggaccaaaatgttgattttatgagttatggaaccaaaatgaaaacaacaaattacttaggggaccaaaag 37416544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 37415099 - 37415004
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| |||||| ||| || ||||||  || || |||||||||    
T  37415099 tttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttaagggaccaaaagt 37415004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 14745212 - 14745281
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaac 115  Q
    |||||| ||| ||| ||||||||||||||||||| ||||| ||| ||||||||||||| || ||||||||    
T  14745212 tttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggaccaagatgtaaac 14745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 14744200 - 14744148
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaac 65  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||| |||||    
T  14744200 tttagacattaaaaaattaacggagatgatcaatttgactaacggagcaaaac 14744148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 20486153 - 20486100
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaac 55  Q
    ||||||||||||||||||||||||||||||||  |||||| || || |||||||    
T  20486153 atattaaaagttttagacattaaaaaactaacaaaaatgaccacttagacaaac 20486100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 7270405 - 7270348
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattag 125  Q
    ||||||||||||||||||||||  || ||||||||| |||||| ||||  ||||||||    
T  7270405 gagggaccaaaatgttgattttaagacttatgggacaaaaatgaaaactggaaattag 7270348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 31844471 - 31844394
Alignment:
Q  47 ttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaatta 124  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||| |||||| ||||||    
T  31844471 ttgactaacggagcaaaacaagagggaccaaaatgttaattttacgagttacgggactaaaatgaaaacaacaaatta 31844394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 43203259 - 43203370
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    ||||||||||||||||||||||||   || ||| |||||  |||||| |||| |||||||||  ||||||||||||| ||||||||||||| |||||| |    
T  43203259 tttagacattaaaaaactaacggaggggaccaaattgactgacggagcaaaataagagggacggaaatgttgattttacgagttatgggaccaaaatgaa 43203358  T
Q  113 aacaagaaatta 124  Q
    || || ||||||    
T  43203359 aataacaaatta 43203370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 24306162 - 24306232
Alignment:
Q  71 ggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||||||| |||||||| ||||||||||||| |||||| |||||||||||||  |||||||||||||||    
T  24306162 ggaccaaaatattgattttacgagttatgggaccaaaatgaaaacaagaaattacttagggaaccaaaagt 24306232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 38697972 - 38697878
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaag 140  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| | |||||||| || |||||||||| |  ||||||  ||||| ||||||||    
T  38697972 tttgactaacggagcaaaacaagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattacttaggggaccaaaag 38697878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 42793847 - 42793734
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatggg 101  Q
    |||| |||||||||||||||||||||| |||| ||   || |  |||||| ||||||| ||||||||||||||||||||||| ||||| | | |||||||    
T  42793847 atatcaaaagttttagacattaaaaaattaacagaggggacctttttgactaacggagcaaaacaagagggaccaaaatgttaattttacaatttatggg 42793748  T
Q  102 actaaaatgtaaac 115  Q
    || ||||| |||||    
T  42793747 accaaaatataaac 42793734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 43202178 - 43202105
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||  ||||| | |||||||    
T  43202178 gagggaccaaaatgttgattttacgagttatgggactaaaatgaaaacaacaaattacttaggggatcaaaagt 43202105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 31845828 - 31845877
Alignment:
Q  68 gagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaa 117  Q
    ||||||||||||||||||||||  |||||||||||| |||||| ||||||    
T  31845828 gagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaa 31845877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 28291398 - 28291330
Alignment:
Q  47 ttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaac 115  Q
    ||||| |||| || |||| |||||||||| ||||||||||||| ||| ||||||||| |||||| ||||    
T  28291398 ttgactaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaac 28291330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 17455128 - 17455059
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaa 138  Q
    ||||||||||| ||||||||| | | ||||| ||| |||||| |||||| ||||||| |||| |||||||    
T  17455128 agggaccaaaaagttgattttacaaattatgtgaccaaaatgaaaacaaaaaattagttaggaaaccaaa 17455059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 10668106 - 10667994
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    ||||||||||||||||| ||||||  ||| ||| ||||| ||| ||| |||    |||||||||||||| |||||||   | ||||||||| |||||| |    
T  10668106 tttagacattaaaaaaccaacggatgtgaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaatttatgggaccaaaatgaa 10668007  T
Q  113 aacaagaaattag 125  Q
    |||  ||||||||    
T  10668006 aactcgaaattag 10667994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 24191514 - 24191402
Alignment:
Q  13 tttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgta 112  Q
    |||||||||||| |||||||||||   |||||||||||  ||| ||| ||||    || |||||||||| |||||||  |||||||||||| |||| | |    
T  24191514 tttagacattaacaaactaacggagtggatcaatttgagtaacagagcaaaagttaagagaccaaaatgatgattttaagagttatgggaccaaaacgaa 24191415  T
Q  113 aacaagaaattag 125  Q
    |||  ||||||||    
T  24191414 aactcgaaattag 24191402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 1309487 - 1309409
Alignment:
Q  61 aaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaa 139  Q
    ||||||||||||||||||||||| ||||| ||||||||  |||||||||| |||||| ||||||  ||||| |||||||    
T  1309487 aaaacaagagggaccaaaatgttaattttacgagttatatgactaaaatgaaaacaacaaattacttaggggaccaaaa 1309409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 19397679 - 19397565
Alignment:
Q  1 tatattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgg 100  Q
    ||||| |||||||||||||||||||||| ||||||||  || |  | |||| ||||||| ||||| |||||||||||||||||  ||||   | ||||||    
T  19397679 tatatcaaaagttttagacattaaaaaaataacggaagggacctttatgactaacggagcaaaacgagagggaccaaaatgttagttttaaaatttatgg 19397580  T
Q  101 gactaaaatgtaaac 115  Q
    ||| |||||||||||    
T  19397579 gaccaaaatgtaaac 19397565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 28610170 - 28610057
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatggg 101  Q
    |||| |||| ||||| |||||||||||||||||||   ||||||||||||  |||||| ||||| |  |||||||||||||  ||||| | | |||||||    
T  28610170 atatcaaaaattttaaacattaaaaaactaacggatgggatcaatttgactgacggagcaaaaccaaggggaccaaaatgtgaattttacaatttatggg 28610071  T
Q  102 actaaaatgtaaac 115  Q
    || |||||||||||    
T  28610070 accaaaatgtaaac 28610057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 19398814 - 19398906
Alignment:
Q  48 tgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaag 140  Q
    |||| ||||||| |||||||||||||||||||||| | |||| | | ||||||||| |||||||||||  | |||||  ||||||||||||||    
T  19398814 tgactaacggagcaaaacaagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttagggaaccaaaag 19398906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 1310695 - 1310758
Alignment:
Q  61 aaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaatta 124  Q
    ||||| ||||||||||||||||||||||| ||||||||| || ||||||| |||||| ||||||    
T  1310695 aaaacgagagggaccaaaatgttgattttacgagttatgagattaaaatgaaaacaacaaatta 1310758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 1147830 - 1147758
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||| ||| |||||||||   |||||||||||||||||| |||||| ||||||| ||||| |||||||||    
T  1147830 agggaccgaaacgttgattttagaagttatgggactaaaatgaaaacaacaaattagttaggggaccaaaagt 1147758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 1149223 - 1149295
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| |||||||||   ||||||||||| |||||| |||||| ||||||| ||||| |||||||||    
T  1149223 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaggggaccaaaagt 1149295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 102414 - 102460
Alignment:
Q  92 gagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaa 138  Q
    |||||||||||| |||||| |||||||||||||| ||||| ||||||    
T  102414 gagttatgggaccaaaatgaaaacaagaaattagttaggggaccaaa 102460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 15832 - 15869
Alignment:
Q  14 ttagacattaaaaaactaacggaaatgatcaatttgac 51  Q
    |||| |||||||||||||||||||||||||||||||||    
T  15832 ttaggcattaaaaaactaacggaaatgatcaatttgac 15869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 136708 - 136636
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| |||||||||   |||||||||||||||||  |||||| ||||||| ||||| || ||||||    
T  136708 agggaccaaaacgttgattttaaaagttatgggactaaaataaaaacaacaaattagttaggggacgaaaagt 136636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 30231559 - 30231487
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||||||| |||||||||   ||||||||||| |||||| |||||| ||||||| || || |||||||||    
T  30231559 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaagggaccaaaagt 30231487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 11968504 - 11968582
Alignment:
Q  61 aaaacaagagggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaa 139  Q
    ||||||| ||||||||||| ||| ||||| |  |||||| ||| |||||| |||||| ||||||| ||||| |||||||    
T  11968504 aaaacaaaagggaccaaaacgttaattttacaggttatgagaccaaaatgaaaacaacaaattagttaggggaccaaaa 11968582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 138241 - 138313
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||| ||| |||||||||   ||||||||||| |||||| |||||  ||||||| ||||| |||||||||    
T  138241 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagt 138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 146262 - 146334
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||| ||| |||||||||   ||||||||||| |||||| |||||  ||||||| ||||| |||||||||    
T  146262 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagt 146334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 11724738 - 11724782
Alignment:
Q  46 tttgacaaacggagtaaaacaagagggaccaaaatgttgattttt 90  Q
    |||||| ||||||| ||||||||| ||||||||||| ||||||||    
T  11724738 tttgaccaacggaggaaaacaagatggaccaaaatgatgattttt 11724782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 30232941 - 30233013
Alignment:
Q  69 agggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattaggtagggaaccaaaagt 141  Q
    ||||||| ||| |||||||||   ||||||||||| |||||| |||||| ||| ||| ||||| |||||||||    
T  30232941 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaactagttaggggaccaaaagt 30233013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 38688 - 38575
Alignment:
Q  2 atattaaaagttttagacattaaaaaactaacggaaatgatcaatttgacaaacggagtaaaacaagagggaccaaaatgttgatttttcgagttatggg 101  Q
    |||| |||| |||||  ||||||||||||||||||   ||||||||||||  |||||| ||||| |  |||||||||||||   |||| | | |||||||    
T  38688 atataaaaaattttaatcattaaaaaactaacggaggggatcaatttgactgacggaggaaaaccaaggggaccaaaatgtgagttttacaatttatggg 38589  T
Q  102 actaaaatgtaaac 115  Q
    || |||||| ||||    
T  38588 accaaaatggaaac 38575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University