View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9540_low_4 (Length: 440)
Name: NF9540_low_4
Description: NF9540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9540_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 8137519 - 8137108
Alignment:
| Q |
18 |
aactggcccttatgttggaatatttattaacaaggaaatgagtaattgaatacattgttgctaatgctatctatgtggtggtccatgtaacaaaataaaa |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8137519 |
aactggcccttatgttggaatatgtattaacaaggaaatgagtaattgaatacattgttgctaatgctatctatgtggtggtccatgtaacaaaataaa- |
8137421 |
T |
|
| Q |
118 |
tatactatgtgatggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagcatattgacttgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8137420 |
tatactatgtgatggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagcatattgacttgg |
8137321 |
T |
|
| Q |
218 |
ttctacnnnnnnnggttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctgaaaat |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
8137320 |
ttctactttttttggttcagttccagtgacaacagccaaaagggtagctagagaaaaaagatagagaagggaaggacctatagctcccatggctgcaaat |
8137221 |
T |
|
| Q |
318 |
tgtgatgtctaaagatgaagtagtgacatctatataaatgcaagaaaatgggccatgattttttaatgagttagttatgtcgtttaatcatcacaataca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8137220 |
tgtgatgtctaaagatgaagtagtgacatctatataaatgcaagaaaatgggccatgattttttaatgggttagttatgtcgtttaatcatcacaataca |
8137121 |
T |
|
| Q |
418 |
tattcaccctatg |
430 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
8137120 |
tattgaccctatg |
8137108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 131 - 312
Target Start/End: Complemental strand, 8162067 - 8161883
Alignment:
| Q |
131 |
ggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatga---agcatattgacttggttctacnnnn |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||| |||||| |||||||| | || |
|
|
| T |
8162067 |
ggtatgaacctggtaagcagaagaaccgattccaaagagaaaatcagaaggaaaaagggtcctgttgaatgaagcagcatagtgacttggatgcacatgt |
8161968 |
T |
|
| Q |
228 |
nnnggttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctg |
312 |
Q |
| |
|
| | ||||||||||||||||||||||||| ||||| | ||||||||||||||| ||| || || ||||||| |||||||| |
|
|
| T |
8161967 |
tgtgatgcagttccagtgacaacagccaaaagtgtagccagagaaaaaagatagaggaggaaatgacttatagctttcatggctg |
8161883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University