View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9540_low_5 (Length: 314)
Name: NF9540_low_5
Description: NF9540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9540_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 32706914 - 32706640
Alignment:
| Q |
21 |
catgcttaaagggatatctgggatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgtcg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32706914 |
catgcttaaagggatatctgggatatttggaagtgaaattgatgcaccacgcctatagctgctatgcctgtgtcttggaaagtagaatttgtaatcgtcg |
32706815 |
T |
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| Q |
121 |
ttacctgaaatcgacgcattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataata |
220 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706814 |
ttagctgaaatcgacgcattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataata |
32706715 |
T |
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| Q |
221 |
aagaggaaggagctaatatccactgagctatagaaaattgactaatcatgactgcacataattcatcctataagc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706714 |
aagaggaaggagctaatatccactgagctatagaaaattgactaatcatgactgcacataattcatcctataagc |
32706640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 32749306 - 32749254
Alignment:
| Q |
161 |
agtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaa |
213 |
Q |
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||||||| |||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
32749306 |
agtgaaagcagcatagtaccaattttcaatctctacaaacatagaaatccaaa |
32749254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 3001712 - 3001615
Alignment:
| Q |
21 |
catgcttaaagggatatctgggatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgt |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
3001712 |
catgcttaaagggatatgtgggatatttggaagtgaaattgatgcaccacgcctatacctgctatacctgtgtcttggagagtagaatttgtaatcgt |
3001615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 3001291 - 3001217
Alignment:
| Q |
137 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatcca |
211 |
Q |
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||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
3001291 |
cattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaatatctacaaacaaagaaatcca |
3001217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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