View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9540_low_6 (Length: 256)
Name: NF9540_low_6
Description: NF9540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9540_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 2102577 - 2102351
Alignment:
| Q |
16 |
cttttaatgttatcattattcaattcattcagatacaatttaagtgataaagttataataaatgaagttaggttagtgcatacacattaaggggaactaa |
115 |
Q |
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| T |
2102577 |
cttttaatgttatcattattcaattcattcagatgcaatttaagtgataa-gttataatacatgaagataggttaatgcatacacagtaaggg-aactaa |
2102480 |
T |
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| Q |
116 |
cctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccattatattcagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102479 |
cctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccattatattcagc |
2102380 |
T |
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| Q |
216 |
ggaattatttgtttcaatgccgagtcctt |
244 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
2102379 |
ggaattatttgtttgaatgccgagtcctt |
2102351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 39183543 - 39183680
Alignment:
| Q |
107 |
gggaactaacctgcttgcagacaagctgagagtcacctcggacatgaacatgctcatatccttggttgctagcttctttcagccccaaaattagaccatt |
206 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
39183543 |
gggaactaacctgcttgcaaacaagctgagagtcacctcggacatgaacatgctcatatccttggttcctagcttcattcagccccaaaattagaccatt |
39183642 |
T |
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| Q |
207 |
atattcagcggaattatttgtttcaatgccgagtcctt |
244 |
Q |
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||||||||| ||||||||||||| | |||||||||||| |
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| T |
39183643 |
atattcagcagaattatttgtttgagtgccgagtcctt |
39183680 |
T |
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