View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9541_high_2 (Length: 216)

Name: NF9541_high_2
Description: NF9541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9541_high_2
NF9541_high_2
[»] chr4 (16 HSPs)
chr4 (13-200)||(1326009-1326196)
chr4 (79-176)||(2527703-2527800)
chr4 (79-178)||(11653570-11653669)
chr4 (84-175)||(46420749-46420840)
chr4 (85-174)||(24539270-24539359)
chr4 (94-175)||(49748217-49748298)
chr4 (79-174)||(9061519-9061614)
chr4 (23-150)||(4875454-4875581)
chr4 (83-188)||(42351123-42351228)
chr4 (85-174)||(49357896-49357985)
chr4 (28-151)||(54243649-54243772)
chr4 (79-168)||(22455138-22455225)
chr4 (89-175)||(40682125-40682211)
chr4 (94-157)||(12758477-12758540)
chr4 (137-175)||(44783708-44783746)
chr4 (85-150)||(23633373-23633438)
[»] chr3 (10 HSPs)
chr3 (13-175)||(49453230-49453392)
chr3 (13-141)||(38362731-38362859)
chr3 (79-174)||(51657245-51657340)
chr3 (79-174)||(49067080-49067175)
chr3 (79-183)||(40823603-40823706)
chr3 (79-172)||(48314571-48314664)
chr3 (87-174)||(13495951-13496038)
chr3 (81-176)||(5557889-5557984)
chr3 (138-177)||(30761264-30761303)
chr3 (140-175)||(53926345-53926380)
[»] chr6 (5 HSPs)
chr6 (13-174)||(28078623-28078784)
chr6 (79-175)||(26898834-26898930)
chr6 (15-101)||(8674808-8674894)
chr6 (15-101)||(8685487-8685573)
chr6 (81-143)||(14365977-14366039)
[»] chr5 (7 HSPs)
chr5 (13-137)||(29379938-29380062)
chr5 (79-174)||(42691629-42691724)
chr5 (85-179)||(19121278-19121372)
chr5 (79-175)||(17413501-17413597)
chr5 (99-174)||(5399100-5399175)
chr5 (79-151)||(35392147-35392219)
chr5 (79-131)||(43622691-43622743)
[»] scaffold0891 (1 HSPs)
scaffold0891 (79-174)||(1259-1354)
[»] chr7 (13 HSPs)
chr7 (84-175)||(729013-729104)
chr7 (23-169)||(36159375-36159521)
chr7 (23-175)||(38029580-38029733)
chr7 (79-174)||(16718882-16718977)
chr7 (79-174)||(17693092-17693187)
chr7 (79-174)||(29322634-29322729)
chr7 (79-174)||(39703883-39703978)
chr7 (85-174)||(40462315-40462404)
chr7 (79-150)||(26455241-26455312)
chr7 (79-174)||(34405054-34405149)
chr7 (79-141)||(24396474-24396536)
chr7 (79-132)||(2732828-2732881)
chr7 (84-132)||(20078065-20078113)
[»] chr8 (7 HSPs)
chr8 (27-140)||(25629537-25629650)
chr8 (79-178)||(41842816-41842915)
chr8 (79-175)||(34893023-34893119)
chr8 (96-177)||(37063918-37063999)
chr8 (79-162)||(16913160-16913244)
chr8 (127-181)||(27853769-27853823)
chr8 (79-175)||(15096696-15096793)
[»] scaffold0210 (2 HSPs)
scaffold0210 (99-174)||(17760-17835)
scaffold0210 (99-174)||(25652-25727)
[»] chr2 (4 HSPs)
chr2 (79-174)||(37995369-37995464)
chr2 (98-175)||(12008478-12008555)
chr2 (79-144)||(10128587-10128652)
chr2 (99-171)||(25882661-25882733)
[»] scaffold0044 (1 HSPs)
scaffold0044 (79-174)||(87829-87924)
[»] chr1 (6 HSPs)
chr1 (79-174)||(50290335-50290430)
chr1 (79-172)||(39268247-39268340)
chr1 (96-175)||(8998819-8998898)
chr1 (86-169)||(49193134-49193217)
chr1 (138-175)||(23085899-23085936)
chr1 (80-136)||(52407913-52407969)
[»] scaffold0090 (1 HSPs)
scaffold0090 (79-174)||(12588-12683)
[»] scaffold1155 (1 HSPs)
scaffold1155 (86-174)||(68-156)
[»] scaffold0642 (1 HSPs)
scaffold0642 (86-174)||(150-238)
[»] scaffold0345 (1 HSPs)
scaffold0345 (86-174)||(10061-10149)
[»] scaffold0105 (1 HSPs)
scaffold0105 (86-174)||(28831-28919)
[»] scaffold0246 (1 HSPs)
scaffold0246 (79-141)||(8829-8891)
[»] scaffold0108 (1 HSPs)
scaffold0108 (84-174)||(13602-13691)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 1326009 - 1326196
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1326009 atggtcataatatgatatgatatagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacattcaactaaactattttgttac 1326108  T
Q  113 atgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttataatttatacacgttggtat 200  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1326109 atgttactgtcaaatattaccttcgatatgacgcgtgcgatagcacgggtcgatggtctaattatttataatttatacacgttggtat 1326196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 2527703 - 2527800
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtta 176  Q
    |||||||||||||| ||||||||||||||||||  | ||||  ||||||||||||||| |||||||  ||||| |||||||| |||||||||||||||    
T  2527703 acaattatgacattcatctaaactattttgttatctattaccgtcaaatattaccttccatatgacatgtgcgttagcacggatcgatggtctagtta 2527800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 11653669 - 11653570
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatt 178  Q
    ||||| |||||||| |||||||||||||| |||| | ||||  ||||||||||||||| ||||||| |||||  ||||||||||||||| ||||||||||    
T  11653669 acaatcatgacattcatctaaactattttattacctattaccgtcaaatattaccttccatatgacccgtgcattagcacgggtcgatgatctagttatt 11653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 46420749 - 46420840
Alignment:
Q  84 tatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||| ||||||||||||||||||| | ||||  ||||||||||||||| |||||||| ||||  |||||||| ||||||||||||||    
T  46420749 tatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgacttgtgcattagcacggatcgatggtctagtt 46420840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 24539270 - 24539359
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||| || |||||||||||||||| | ||||  ||||||||||||||| ||||||| |||||| |||||| |||||||||||||||    
T  24539270 atgacattcatgtaaactattttgttacctattaccgtcaaatattaccttccatatgacccgtgcgttagcactggtcgatggtctagt 24539359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 49748298 - 49748217
Alignment:
Q  94 atctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||||||||| ||| | ||||  ||||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  49748298 atctaaactattttgctacctattaccgtcaaatattaccttccatatgacccgtgcgttagcacgggtcgatggtctagtt 49748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 9061519 - 9061614
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  | ||||||||| ||| |||||||   |||| ||||||||||||||||||||||    
T  9061519 acaatcatgacattcatctaaactattttgttacctattaccgttaaatattacattccatatgacctatgcgttagcacgggtcgatggtctagt 9061614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 4875581 - 4875454
Alignment:
Q  23 tatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttacatgttactct 122  Q
    |||| |||| ||||||||||| ||||||| |  ||||||||||||| |    ||  ||||| |||||||| ||||||||||||||||||| | |||   |    
T  4875581 tatgttatggtacagtaccaacgtctatgcttcttaatattatgaaatattacatgacaatcatgacattcatctaaactattttgttacctattaacgt 4875482  T
Q  123 caaatattaccttcgatatgactcgtgc 150  Q
    |||||||||||||| ||||||| |||||    
T  4875481 caaatattaccttccatatgacccgtgc 4875454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 42351123 - 42351228
Alignment:
Q  83 ttatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttata 182  Q
    |||||||||| ||||||||||||||||||  | ||||  ||||||||||||||| |||||||| || || ||||||   | ||||||||||| || |||     
T  42351123 ttatgacattcatctaaactattttgttatctattaccgtcaaatattaccttccatatgacttgtacgttagcacaaattgatggtctagtgatgtatt 42351222  T
Q  183 atttat 188  Q
    ||||||    
T  42351223 atttat 42351228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 49357896 - 49357985
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||| ||||||| || | | |||| | ||||  ||||||||||||||| |||||||  ||||| ||||||||||||||||||||||    
T  49357896 atgacattcatctaaaatactattttacctattaccgtcaaatattaccttccatatgaccagtgcgttagcacgggtcgatggtctagt 49357985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 54243649 - 54243772
Alignment:
Q  28 tatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttacatgttactctcaaat 127  Q
    |||| ||||||||||| ||||||| |  ||||||||||||| |     | |||||| ||||||||||| |||||||||||||||| | |||   ||||||    
T  54243649 tatggtacagtaccaacgtctatgcttcttaatattatgaaatactatataacaatcatgacatttatttaaactattttgttacctattatcgtcaaat 54243748  T
Q  128 attaccttcgatatgactcgtgcg 151  Q
    |||| |||| ||||||| ||||||    
T  54243749 attaacttccatatgacccgtgcg 54243772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 22455138 - 22455225
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatgg 168  Q
    |||||||||||||| || ||||||||||| |||| | ||||  ||||||||||||||| ||||||| | |||| ||  ||||||||||||    
T  22455138 acaattatgacattcatttaaactattttattacttattaccgtcaaatattaccttccatatgacccatgcgtta--acgggtcgatgg 22455225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 40682211 - 40682125
Alignment:
Q  89 catttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||| ||||||||||||||||||| | || |  | ||||||||||||||||||| | |||||| ||||| ||||| ||| |||||||    
T  40682211 cattcatctaaactattttgttacctattgccgttaaatattaccttcgatatgtcccgtgcgttagcatgggtcaatgatctagtt 40682125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 12758540 - 12758477
Alignment:
Q  94 atctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagca 157  Q
    ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| ||| || |||||    
T  12758540 atctaaactattttgttacttattaccgtcaaatattaccttccatatgacccgtacgttagca 12758477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 44783746 - 44783708
Alignment:
Q  137 gatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  44783746 gataagacccgtgcgatagcacgggtcgatggtctagtt 44783708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 23633438 - 23633373
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgc 150  Q
    |||||||| || |||||||||||||||  | ||||  |||||||||||||||| |||||| |||||    
T  23633438 atgacattcatttaaactattttgttatctattaccgtcaaatattaccttcggtatgacccgtgc 23633373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 49453392 - 49453230
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||    
T  49453392 atggacataatatgatatgatacaataccaatgtctatgataattaatattatgaatttaattagaacaattatgacatttaactaaactattttgctac 49453293  T
Q  113 atgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    || ||||| | ||||||||||||| ||||| | || |||||||||| ||||||||||||||||    
T  49453292 atattactataaaatattaccttcaatatgtcccgcgcgatagcacaggtcgatggtctagtt 49453230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 38362731 - 38362859
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||    
T  38362731 atggacatactatgatatggtacagtaccaatgtctatgataattaatattatgaatttaattagaacaattatgacattcaactaaactattttattac 38362830  T
Q  113 atgttactctcaaatattaccttcgatat 141  Q
    || ||||  ||||||||||||||||||||    
T  38362831 atattaccgtcaaatattaccttcgatat 38362859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 51657245 - 51657340
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||  ||||| ||||||||||||||||||||||    
T  51657245 acaattatgacattcatctaaactattttgttacttgttaccctcaaatattaccttccatatgacatgtgcgttagcacgggtcgatggtctagt 51657340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 49067175 - 49067080
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  49067175 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgacccgtgcgttagcacgggtcgatggtctagt 49067080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 40823603 - 40823706
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatt 178  Q
    ||||| |||||||| |||||||||||||| |||| | ||||  ||||||||||||||| ||||||| |||||  ||||||||||||||||||||| ||||    
T  40823603 acaatcatgacattcatctaaactatttttttacctattacggtcaaatattaccttccatatgacccgtgccttagcacgggtcgatggtctag-tatt 40823701  T
Q  179 tataa 183  Q
    |||||    
T  40823702 tataa 40823706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 48314571 - 48314664
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtcta 172  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| ||| || ||||||||||||||| ||||    
T  48314571 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgacccgtacgttagcacgggtcgatgatcta 48314664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 13495951 - 13496038
Alignment:
Q  87 gacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||| |||||||||||||| |||| | ||||  ||||||||||||||||||||||| | | || ||||||||||||||||||||||    
T  13495951 gacattcatctaaactattttattacctattaccgtcaaatattaccttcgatatgacccttacgttagcacgggtcgatggtctagt 13496038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 5557889 - 5557984
Alignment:
Q  81 aattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtta 176  Q
    |||||||||||| ||||||| ||||||||||| | |||   ||||||||||| ||| |||||||  ||||| ||||||||| | ||||||| ||||    
T  5557889 aattatgacattcatctaaattattttgttacctattatcatcaaatattacattccatatgacctgtgcgttagcacgggccaatggtcttgtta 5557984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 30761303 - 30761264
Alignment:
Q  138 atatgactcgtgcgatagcacgggtcgatggtctagttat 177  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  30761303 atatgacccgtgcgatagcacgggtggatggtctagttat 30761264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 53926380 - 53926345
Alignment:
Q  140 atgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||||||||||| |||||||||||||||||||||||    
T  53926380 atgactcgtgcgttagcacgggtcgatggtctagtt 53926345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 28078784 - 28078623
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||| |||||||||    
T  28078784 atggacataatatgatatggtacagtaccaatgtctatgataattaatattatgaatttaattagaacaattatgacattcaattaaactcttttgttac 28078685  T
Q  113 atgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||| |||   ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  28078684 atgtcactgctaaatattaccttcgatatgacccgtgcgatatcacgggtcgatggtctagt 28078623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 26898930 - 26898834
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| |||| | |||||||||||||||||||||||    
T  26898930 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgacccgtgtggtagcacgggtcgatggtctagtt 26898834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 8674808 - 8674894
Alignment:
Q  15 ggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaac 101  Q
    |||||| |||||||||| |||| ||||||| | ||||||||||||||||||||||||||| | ||||||||||||||| | ||||||    
T  8674808 ggacataatatgatatggtacaataccaatatatatgataattaatattatgaatttaattaaaacaattatgacattcaactaaac 8674894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 8685487 - 8685573
Alignment:
Q  15 ggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaac 101  Q
    |||||| |||||||||| |||| ||||||| | ||||||||||||||||||||||||||| | ||||||||||||||| | ||||||    
T  8685487 ggacataatatgatatggtacaataccaatatatatgataattaatattatgaatttaattaaaacaattatgacattcaactaaac 8685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 14366039 - 14365977
Alignment:
Q  81 aattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatga 143  Q
    ||||||||||||||||||||||||||||||   | ||||  ||||||||| ||||||||||||    
T  14366039 aattatgacatttatctaaactattttgttttctattaccatcaaatattgccttcgatatga 14365977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 29379938 - 29380062
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  29379938 atggacataatatgatatggtacagtaccaatgtctatgataattaatattatgaatttaattagaacaattatgacattcaactaaactattttgttac 29380037  T
Q  113 atgttactctcaaatattaccttcg 137  Q
    ||||||||  |||||||||| ||||    
T  29380038 atgttactgccaaatattactttcg 29380062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 42691724 - 42691629
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| |||||||||||||||||| || | ||  ||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  42691724 acaatcatgacattcatctaaactattttgttagatatcaccatcaaatattaccttccatatgactcgtgcgttagcacaggtcgatggtctagt 42691629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 19121372 - 19121278
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttattt 179  Q
    |||||||| ||||||||||||||||||| | ||||  | ||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||    
T  19121372 atgacattcatctaaactattttgttacctattaccgtgaaatattaccttccatatgaccagtgcgttagcacgggtcgatggtctagttattt 19121278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 17413597 - 17413501
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||  ||||| |   ||||||||||||||||||||    
T  17413597 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgatccgtgctaacacacgggtcgatggtctagtt 17413501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 5399100 - 5399175
Alignment:
Q  99 aactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||| | ||||  |||||||||||||||||||||||  ||||| ||| | || |||||||||||||    
T  5399100 aactattttgttacctattaccgtcaaatattaccttcgatatgacgtgtgcgttagtatggatcgatggtctagt 5399175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 35392219 - 35392147
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcg 151  Q
    ||||| |||| ||| ||||||||||||||||||| | ||||  ||||||||||| ||| |||| || ||||||    
T  35392219 acaatcatgatattcatctaaactattttgttacctattaccgtcaaatattactttccatatcacccgtgcg 35392147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 43622691 - 43622743
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatatta 131  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||    
T  43622691 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatatta 43622743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 1354 - 1259
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||  | ||||| ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||    
T  1354 acaatcatgacattcatctaaactattttgttatctattactgtcaaatattaccttccatatgacccgtgcgttagcacggatcgatggtctagt 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 729013 - 729104
Alignment:
Q  84 tatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||| ||||||||||||| ||||| | ||||  ||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  729013 tatgacattcatctaaactatttggttacctattaccgtcaaatattaccttcgatatgacccgtacgttagcacgggtcgatggtctagtt 729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 36159375 - 36159521
Alignment:
Q  23 tatgatatgatacagtaccaatgtctatgataattaatattatgaatt-taatcagaacaattatgacatttatctaaactattttgttacatgttactc 121  Q
    |||| |||| ||||||||||| ||||||| |  ||||||||||||| | | ||  || |||| |||||||| ||||||||||||||||||| | ||||      
T  36159375 tatgttatggtacagtaccaacgtctatgcttcttaatattatgaaatattatatga-caatcatgacattcatctaaactattttgttacctattaccg 36159473  T
Q  122 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggt 169  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||    
T  36159474 tcaaatattacctttcatatgactcgtgcgttagcacgggtcgatggt 36159521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 38029580 - 38029733
Alignment:
Q  23 tatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatc-agaacaattatgacatttatctaaactattttgttacatgttactc 121  Q
    |||| |||| ||||||||||| ||||||| |  ||||||||||||| ||| |  |  ||||| || ||||| ||||||||||||||||||| | ||||      
T  38029580 tatgttatggtacagtaccaacgtctatgcttcttaatattatgaaattactatatgacaatcataacattcatctaaactattttgttacctattaccg 38029679  T
Q  122 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||||||||| ||||||  |||| | |||||||||||||||||||||||    
T  38029680 tcaaatattaccttcaatatgatccgtgtgttagcacgggtcgatggtctagtt 38029733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 16718882 - 16718977
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| |||| || ||||| |  ||||||||||||||||||||    
T  16718882 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatataacccgtgctaatgcacgggtcgatggtctagt 16718977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 17693092 - 17693187
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| |||| || ||||| |  ||||||||||||||||||||    
T  17693092 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatataacccgtgctaatgcacgggtcgatggtctagt 17693187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 29322634 - 29322729
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||| ||||||||||||||||||  | ||||  ||||||||||||||| |||||||  ||||| |||||||||| |||||| ||||    
T  29322634 acaattatgacattcatctaaactattttgttatctattaccgtcaaatattaccttccatatgaccggtgcgttagcacgggtagatggtttagt 29322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 39703978 - 39703883
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||| ||| | ||||  ||| || |||||||||| ||||| |||||| ||||||||||||||||||||||    
T  39703978 acaatcatgacattcatctaaactattttgctacctattaccgtcatattttaccttcgaaatgacccgtgcgttagcacgggtcgatggtctagt 39703883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 40462404 - 40462315
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||| |||||||||||||| ||||   ||||  ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  40462404 atgacattcatctaaactattttattaccaattaccatcaaatattacctttcatatgacccgtgcgttagcacgggtcgatggtctagt 40462315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 26455241 - 26455312
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgc 150  Q
    ||||| |||||||||||||||||||||||||||  | ||||  ||||||||||||||||||||||| |||||    
T  26455241 acaatcatgacatttatctaaactattttgttatctattaccgtcaaatattaccttcgatatgacccgtgc 26455312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 34405149 - 34405054
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| || |||||||||||||||| | ||||  ||||||||||||||| |||| || ||| || |||||||  |||||||||||||    
T  34405149 acaatcatgacattcatttaaactattttgttacttattaccgtcaaatattaccttccatattacccgtacgttagcacgaatcgatggtctagt 34405054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 24396536 - 24396474
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatat 141  Q
    ||||| |||||||| ||||||| ||||||||||| | ||||  ||||||||||||||| ||||    
T  24396536 acaatcatgacattcatctaaattattttgttacctattaccgtcaaatattaccttccatat 24396474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 2732881 - 2732828
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattac 132  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  |||||||||||    
T  2732881 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattac 2732828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 20078065 - 20078113
Alignment:
Q  84 tatgacatttatctaaactattttgttacatgttactctcaaatattac 132  Q
    ||||||||| ||||||||||||||||||| | ||||  |||||||||||    
T  20078065 tatgacattcatctaaactattttgttacctattaccgtcaaatattac 20078113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 25629650 - 25629537
Alignment:
Q  27 atatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttacatgttactctcaaa 126  Q
    ||||| || |||| ||| ||||||| ||||||||||||||| || ||| || |||||||||||||| | |||||||||||||||||||||||    ||||    
T  25629650 atatggtaaagtaacaacgtctatggtaattaatattatgatttgaattaggacaattatgacattcaactaaactattttgttacatgttagcgccaaa 25629551  T
Q  127 tattaccttcgata 140  Q
    ||||||||||||||    
T  25629550 tattaccttcgata 25629537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 41842915 - 41842816
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatt 178  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||| ||||||| ||| |||||||  ||||  ||||||||||||||||||||||||||    
T  41842915 acaatcatgacattcatctaaactattttgttacctattaccgtcagatattactttccatatgacctgtgcattagcacgggtcgatggtctagttatt 41842816  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 34893119 - 34893023
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||||||||||||| || |||||| ||||||||| | ||||  |||||||||||| ||  ||||||| ||||| ||||||||||| |||||||||||    
T  34893119 acaattatgacattcatttaaactgttttgttacctattaccgtcaaatattaccctccttatgacttgtgcgttagcacgggtcaatggtctagtt 34893023  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 37063918 - 37063999
Alignment:
Q  96 ctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttat 177  Q
    ||||||||||||||||| | ||| | ||||||||||| ||||||||||| ||||| |  ||||||||| |||||||||||||    
T  37063918 ctaaactattttgttacttattattgtcaaatattactttcgatatgacccgtgctaacgcacgggtcaatggtctagttat 37063999  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 16913244 - 16913160
Alignment:
Q  79 acaattatgacatttatctaaactattttgtt-acatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggt 162  Q
    ||||| ||||| || ||||||||||||||||| |||| ||||  ||||||||||||||| ||||||| |||||| ||||||||||    
T  16913244 acaatcatgactttcatctaaactattttgtttacatattaccgtcaaatattaccttccatatgacccgtgcgttagcacgggt 16913160  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 27853823 - 27853769
Alignment:
Q  127 tattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttat 181  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  27853823 tattaccttcaatatgacccgtgcgttagcacgggtcgatggtctagttgtttat 27853769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 15096793 - 15096696
Alignment:
Q  79 acaattatgacatttatctaaactattttgtt-acatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||||||||||||| |||||||||||||| || || | ||||  |||||||||||||||||||| || ||| || ||||  || ||||| ||||||||    
T  15096793 acaattatgacattcatctaaactatttttttaacctattaccatcaaatattaccttcgatataacccgtacgttagcttggttcgatagtctagtt 15096696  T

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Target: scaffold0210 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 17760 - 17835
Alignment:
Q  99 aactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  17760 aactattttgttacatattaccgtcaaatattaccttcgaaatgactcgtgcattagcacgggtcgatggtctagt 17835  T

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Target: scaffold0210; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 25652 - 25727
Alignment:
Q  99 aactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  25652 aactattttgttacatattaccgtcaaatattaccttcgaaatgactcgtgcattagcacgggtcgatggtctagt 25727  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 37995369 - 37995464
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||||||||||||||||||||||| |  |||  ||||||||||||||| ||||||  |||| | ||||||||||||||||||||||    
T  37995369 acaatcatgacatttatctaaactattttgttacctactaccgtcaaatattaccttccatatgatccgtgtgttagcacgggtcgatggtctagt 37995464  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 12008555 - 12008478
Alignment:
Q  98 aaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||||||||  | ||||| ||||||||||||||||||||||| |||| | ||||||||||| |||||||||||    
T  12008555 aaactattttgttatctattactgtcaaatattaccttcgatatgacccgtgtgttagcacgggtcaatggtctagtt 12008478  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 10128652 - 10128587
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgac 144  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  |||||||||||||||||||||||    
T  10128652 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttcgatatgac 10128587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 25882733 - 25882661
Alignment:
Q  99 aactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtct 171  Q
    |||||||||||||| | ||||  |||||||||||||||||||||||  ||||| |||||||||| ||||||||    
T  25882733 aactattttgttacctattaccgtcaaatattaccttcgatatgacatgtgcgttagcacgggttgatggtct 25882661  T

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Target: scaffold0044 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 87829 - 87924
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||||| ||||  |||||||||| |||  |||||||||||||| ||||| || ||||| |||||||    
T  87829 acaatcatgacattcatctaaactattttgttacatattaccgtcaaatattatctttcatatgactcgtgcgttagcaaggatcgatagtctagt 87924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 50290335 - 50290430
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||  ||| | ||||  ||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||    
T  50290335 acaatcatgacattcatctaaactatttttctacctattaccgtcaaatattacgttccatatgacccgtgcgttagcacgggtcgatggtctagt 50290430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 39268340 - 39268247
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtcta 172  Q
    |||||||||||||| ||||||| || |||||||| | |||   ||||||||||| ||||||||||| |||||| |||| |||||||||||||||    
T  39268340 acaattatgacattcatctaaagtactttgttacctattatcgtcaaatattacattcgatatgacccgtgcgttagcgcgggtcgatggtcta 39268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 8998819 - 8998898
Alignment:
Q  96 ctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||||||||||| | ||||  ||||||||||| |||||||||||  ||||| ||||||||||| |||||||||||    
T  8998819 ctaaactattttgttacctattaccgtcaaatattacattcgatatgacctgtgcgttagcacgggtcaatggtctagtt 8998898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 49193217 - 49193134
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggt 169  Q
    ||||||| | ||||| ||||||||||| | ||||  ||||||||||| ||| ||||||| |||||| |||||||| || |||||    
T  49193217 tgacattcaactaaattattttgttacctattaccgtcaaatattacattcaatatgacacgtgcgttagcacggatcaatggt 49193134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 23085936 - 23085899
Alignment:
Q  138 atatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  23085936 atatgacccgtgcgttagcacgggtcgatggtctagtt 23085899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 52407969 - 52407913
Alignment:
Q  80 caattatgacatttatctaaactattttgttacatgttactctcaaatattaccttc 136  Q
    |||| |||||||| ||||||||||||||||||| | ||||  |||||| ||||||||    
T  52407969 caatcatgacattcatctaaactattttgttacctattaccgtcaaatgttaccttc 52407913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 12683 - 12588
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| ||| |||| || |||||||||||||||| | ||||  ||||||||||| ||| ||||||| |||||  ||||||||||||||||||||||    
T  12683 acaatcatgtcattcatttaaactattttgttacctattaccgtcaaatattacattccatatgacccgtgcattagcacgggtcgatggtctagt 12588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 156 - 68
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| ||||||||||||| ||||| | ||||  || ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  156 tgacattcatctaaactatttagttacctattaccgtctaatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 150 - 238
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| ||||||||||||| ||||| | ||||  || ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  150 tgacattcatctaaactatttagttacctattaccgtctaatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 10061 - 10149
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| ||||||||||||| ||||| | ||||  || ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  10061 tgacattcatctaaactatttagttacctattaccgtctaatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 10149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 28919 - 28831
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| ||||||||||||| ||||| | ||||  || ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  28919 tgacattcatctaaactatttagttacctattaccgtctaatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 28831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 8891 - 8829
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatat 141  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||    
T  8891 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatat 8829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 13691 - 13602
Alignment:
Q  84 tatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| | ||||||||||||||||||  | ||||  |||||||| | ||||||||| ||  ||||| ||||||||||||||||||||||    
T  13691 tatgacaatcatctaaactattttgttatctattaccatcaaatat-atcttcgatataacctgtgcgttagcacgggtcgatggtctagt 13602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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