View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9541_low_1 (Length: 567)
Name: NF9541_low_1
Description: NF9541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9541_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 42393589 - 42394148
Alignment:
| Q |
1 |
ctcttcttctaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactca |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42393589 |
ctcttctactaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaattca |
42393688 |
T |
|
| Q |
101 |
acggtattggaggatgtgtctgatccaccaagtaccatgtcttgttcatacaaactcaatggtattaagttcttcaacacgcgccttagggcacatgtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
42393689 |
acggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggtattaagttcttcaacgcacgccttagggcacatgtta |
42393788 |
T |
|
| Q |
201 |
gcattctcaaataaattttaatttgaatcagagttaaataaaccatatgccgcnnnnnnnngtgagaagacgctaaacataaatgtgtaacaaaggtagc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42393789 |
gcattctcaaataaattttaatttgaatcagagttaaacaaaccatataccgcaaaaaaaagtgagaagacgctaaacataaatgtgtaacaaaggtagc |
42393888 |
T |
|
| Q |
301 |
ataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaaatccttactttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393889 |
ataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaaatccttactttc |
42393988 |
T |
|
| Q |
401 |
actctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaata |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393989 |
actctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaata |
42394088 |
T |
|
| Q |
501 |
ccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccctatg |
560 |
Q |
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| T |
42394089 |
ccctgcaaatcaaaccgagccagcgcaggaaaaaaatctgacaagttcggcttccctatg |
42394148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 289 - 556
Target Start/End: Original strand, 42377959 - 42378229
Alignment:
| Q |
289 |
aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaa |
388 |
Q |
| |
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|||||| ||||||||||| ||| |||||||| || || || |||| || |||||||| |||||||| |||||||||||||||||||||||||||| ||| |
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| T |
42377959 |
aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaacaaaaactgcagaaa |
42378058 |
T |
|
| Q |
389 |
atccttactttcact---ctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattc |
485 |
Q |
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||| |||| || | |||||| || || | |||||| || |||||||||||||||||| |||||||| |||||||| |||||||||||| |||| |
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| T |
42378059 |
gtccctactcccattattctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattc |
42378158 |
T |
|
| Q |
486 |
atatctttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccc |
556 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||||||| |
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| T |
42378159 |
atatctttcacaacaccctgcaaatcaaaccgggccaacccaggaaaaaaatccgacaaattcggcttccc |
42378229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42377037 - 42377182
Alignment:
| Q |
1 |
ctcttcttctaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactca |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||| | ||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
42377037 |
ctcttctactaagttatcttttccaaccacagtttctaactcctcttgaaccttcctcatcacttctggtttgttcatcatttctgccattacaaactca |
42377136 |
T |
|
| Q |
101 |
acggtattggaggatgtgtctgatccaccaagtaccatgtcttgtt |
146 |
Q |
| |
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| || ||||||||||||||||||||||| | ||||||||| |||| |
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| T |
42377137 |
attgtgttggaggatgtgtctgatccacccactaccatgtcctgtt |
42377182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 42387386 - 42387539
Alignment:
| Q |
1 |
ctcttcttctaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaactca |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||| |||||||| ||| ||| |||||||| |
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| T |
42387386 |
ctcttctactaagttatctttcccaaccacgatttccagttcctcttgaaccttcctcattacttctgg-ttgtccatcatttatgctattacaaactca |
42387484 |
T |
|
| Q |
101 |
acggtattggaggatgtgtctgatccaccaagtaccatgtcttgttcatacaaac |
155 |
Q |
| |
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| || ||||||||||||||||||||||| | ||||||||| |||||||| |||| |
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| T |
42387485 |
attgtgttggaggatgtgtctgatccacccactaccatgtcctgttcatataaac |
42387539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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