View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9541_low_11 (Length: 216)

Name: NF9541_low_11
Description: NF9541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9541_low_11
NF9541_low_11
[»] chr4 (16 HSPs)
chr4 (13-200)||(1326009-1326196)
chr4 (79-176)||(2527703-2527800)
chr4 (79-178)||(11653570-11653669)
chr4 (84-175)||(46420749-46420840)
chr4 (85-174)||(24539270-24539359)
chr4 (94-175)||(49748217-49748298)
chr4 (79-174)||(9061519-9061614)
chr4 (23-150)||(4875454-4875581)
chr4 (83-188)||(42351123-42351228)
chr4 (85-174)||(49357896-49357985)
chr4 (28-151)||(54243649-54243772)
chr4 (79-168)||(22455138-22455225)
chr4 (89-175)||(40682125-40682211)
chr4 (94-157)||(12758477-12758540)
chr4 (137-175)||(44783708-44783746)
chr4 (85-150)||(23633373-23633438)
[»] chr3 (10 HSPs)
chr3 (13-175)||(49453230-49453392)
chr3 (13-141)||(38362731-38362859)
chr3 (79-174)||(51657245-51657340)
chr3 (79-174)||(49067080-49067175)
chr3 (79-183)||(40823603-40823706)
chr3 (79-172)||(48314571-48314664)
chr3 (87-174)||(13495951-13496038)
chr3 (81-176)||(5557889-5557984)
chr3 (138-177)||(30761264-30761303)
chr3 (140-175)||(53926345-53926380)
[»] chr6 (5 HSPs)
chr6 (13-174)||(28078623-28078784)
chr6 (79-175)||(26898834-26898930)
chr6 (15-101)||(8674808-8674894)
chr6 (15-101)||(8685487-8685573)
chr6 (81-143)||(14365977-14366039)
[»] chr5 (7 HSPs)
chr5 (13-137)||(29379938-29380062)
chr5 (79-174)||(42691629-42691724)
chr5 (85-179)||(19121278-19121372)
chr5 (79-175)||(17413501-17413597)
chr5 (99-174)||(5399100-5399175)
chr5 (79-151)||(35392147-35392219)
chr5 (79-131)||(43622691-43622743)
[»] scaffold0891 (1 HSPs)
scaffold0891 (79-174)||(1259-1354)
[»] chr7 (13 HSPs)
chr7 (84-175)||(729013-729104)
chr7 (23-169)||(36159375-36159521)
chr7 (23-175)||(38029580-38029733)
chr7 (79-174)||(16718882-16718977)
chr7 (79-174)||(17693092-17693187)
chr7 (79-174)||(29322634-29322729)
chr7 (79-174)||(39703883-39703978)
chr7 (85-174)||(40462315-40462404)
chr7 (79-150)||(26455241-26455312)
chr7 (79-174)||(34405054-34405149)
chr7 (79-141)||(24396474-24396536)
chr7 (79-132)||(2732828-2732881)
chr7 (84-132)||(20078065-20078113)
[»] chr8 (7 HSPs)
chr8 (27-140)||(25629537-25629650)
chr8 (79-178)||(41842816-41842915)
chr8 (79-175)||(34893023-34893119)
chr8 (96-177)||(37063918-37063999)
chr8 (79-162)||(16913160-16913244)
chr8 (127-181)||(27853769-27853823)
chr8 (79-175)||(15096696-15096793)
[»] scaffold0210 (2 HSPs)
scaffold0210 (99-174)||(17760-17835)
scaffold0210 (99-174)||(25652-25727)
[»] chr2 (4 HSPs)
chr2 (79-174)||(37995369-37995464)
chr2 (98-175)||(12008478-12008555)
chr2 (79-144)||(10128587-10128652)
chr2 (99-171)||(25882661-25882733)
[»] scaffold0044 (1 HSPs)
scaffold0044 (79-174)||(87829-87924)
[»] chr1 (6 HSPs)
chr1 (79-174)||(50290335-50290430)
chr1 (79-172)||(39268247-39268340)
chr1 (96-175)||(8998819-8998898)
chr1 (86-169)||(49193134-49193217)
chr1 (138-175)||(23085899-23085936)
chr1 (80-136)||(52407913-52407969)
[»] scaffold0090 (1 HSPs)
scaffold0090 (79-174)||(12588-12683)
[»] scaffold1155 (1 HSPs)
scaffold1155 (86-174)||(68-156)
[»] scaffold0642 (1 HSPs)
scaffold0642 (86-174)||(150-238)
[»] scaffold0345 (1 HSPs)
scaffold0345 (86-174)||(10061-10149)
[»] scaffold0105 (1 HSPs)
scaffold0105 (86-174)||(28831-28919)
[»] scaffold0246 (1 HSPs)
scaffold0246 (79-141)||(8829-8891)
[»] scaffold0108 (1 HSPs)
scaffold0108 (84-174)||(13602-13691)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 1326009 - 1326196
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  1326009 atggtcataatatgatatgatatagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacattcaactaaactattttgttac 1326108  T
Q  113 atgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttataatttatacacgttggtat 200  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1326109 atgttactgtcaaatattaccttcgatatgacgcgtgcgatagcacgggtcgatggtctaattatttataatttatacacgttggtat 1326196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 2527703 - 2527800
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtta 176  Q
    |||||||||||||| ||||||||||||||||||  | ||||  ||||||||||||||| |||||||  ||||| |||||||| |||||||||||||||    
T  2527703 acaattatgacattcatctaaactattttgttatctattaccgtcaaatattaccttccatatgacatgtgcgttagcacggatcgatggtctagtta 2527800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 11653669 - 11653570
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatt 178  Q
    ||||| |||||||| |||||||||||||| |||| | ||||  ||||||||||||||| ||||||| |||||  ||||||||||||||| ||||||||||    
T  11653669 acaatcatgacattcatctaaactattttattacctattaccgtcaaatattaccttccatatgacccgtgcattagcacgggtcgatgatctagttatt 11653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 46420749 - 46420840
Alignment:
Q  84 tatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||| ||||||||||||||||||| | ||||  ||||||||||||||| |||||||| ||||  |||||||| ||||||||||||||    
T  46420749 tatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgacttgtgcattagcacggatcgatggtctagtt 46420840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 24539270 - 24539359
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||| || |||||||||||||||| | ||||  ||||||||||||||| ||||||| |||||| |||||| |||||||||||||||    
T  24539270 atgacattcatgtaaactattttgttacctattaccgtcaaatattaccttccatatgacccgtgcgttagcactggtcgatggtctagt 24539359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 49748298 - 49748217
Alignment:
Q  94 atctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||||||||| ||| | ||||  ||||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  49748298 atctaaactattttgctacctattaccgtcaaatattaccttccatatgacccgtgcgttagcacgggtcgatggtctagtt 49748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 9061519 - 9061614
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  | ||||||||| ||| |||||||   |||| ||||||||||||||||||||||    
T  9061519 acaatcatgacattcatctaaactattttgttacctattaccgttaaatattacattccatatgacctatgcgttagcacgggtcgatggtctagt 9061614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 4875581 - 4875454
Alignment:
Q  23 tatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttacatgttactct 122  Q
    |||| |||| ||||||||||| ||||||| |  ||||||||||||| |    ||  ||||| |||||||| ||||||||||||||||||| | |||   |    
T  4875581 tatgttatggtacagtaccaacgtctatgcttcttaatattatgaaatattacatgacaatcatgacattcatctaaactattttgttacctattaacgt 4875482  T
Q  123 caaatattaccttcgatatgactcgtgc 150  Q
    |||||||||||||| ||||||| |||||    
T  4875481 caaatattaccttccatatgacccgtgc 4875454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 42351123 - 42351228
Alignment:
Q  83 ttatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttata 182  Q
    |||||||||| ||||||||||||||||||  | ||||  ||||||||||||||| |||||||| || || ||||||   | ||||||||||| || |||     
T  42351123 ttatgacattcatctaaactattttgttatctattaccgtcaaatattaccttccatatgacttgtacgttagcacaaattgatggtctagtgatgtatt 42351222  T
Q  183 atttat 188  Q
    ||||||    
T  42351223 atttat 42351228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 49357896 - 49357985
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||| ||||||| || | | |||| | ||||  ||||||||||||||| |||||||  ||||| ||||||||||||||||||||||    
T  49357896 atgacattcatctaaaatactattttacctattaccgtcaaatattaccttccatatgaccagtgcgttagcacgggtcgatggtctagt 49357985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 54243649 - 54243772
Alignment:
Q  28 tatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttacatgttactctcaaat 127  Q
    |||| ||||||||||| ||||||| |  ||||||||||||| |     | |||||| ||||||||||| |||||||||||||||| | |||   ||||||    
T  54243649 tatggtacagtaccaacgtctatgcttcttaatattatgaaatactatataacaatcatgacatttatttaaactattttgttacctattatcgtcaaat 54243748  T
Q  128 attaccttcgatatgactcgtgcg 151  Q
    |||| |||| ||||||| ||||||    
T  54243749 attaacttccatatgacccgtgcg 54243772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 22455138 - 22455225
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatgg 168  Q
    |||||||||||||| || ||||||||||| |||| | ||||  ||||||||||||||| ||||||| | |||| ||  ||||||||||||    
T  22455138 acaattatgacattcatttaaactattttattacttattaccgtcaaatattaccttccatatgacccatgcgtta--acgggtcgatgg 22455225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 40682211 - 40682125
Alignment:
Q  89 catttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||| ||||||||||||||||||| | || |  | ||||||||||||||||||| | |||||| ||||| ||||| ||| |||||||    
T  40682211 cattcatctaaactattttgttacctattgccgttaaatattaccttcgatatgtcccgtgcgttagcatgggtcaatgatctagtt 40682125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 12758540 - 12758477
Alignment:
Q  94 atctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagca 157  Q
    ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| ||| || |||||    
T  12758540 atctaaactattttgttacttattaccgtcaaatattaccttccatatgacccgtacgttagca 12758477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 44783746 - 44783708
Alignment:
Q  137 gatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  44783746 gataagacccgtgcgatagcacgggtcgatggtctagtt 44783708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 23633438 - 23633373
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgc 150  Q
    |||||||| || |||||||||||||||  | ||||  |||||||||||||||| |||||| |||||    
T  23633438 atgacattcatttaaactattttgttatctattaccgtcaaatattaccttcggtatgacccgtgc 23633373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 49453392 - 49453230
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||    
T  49453392 atggacataatatgatatgatacaataccaatgtctatgataattaatattatgaatttaattagaacaattatgacatttaactaaactattttgctac 49453293  T
Q  113 atgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    || ||||| | ||||||||||||| ||||| | || |||||||||| ||||||||||||||||    
T  49453292 atattactataaaatattaccttcaatatgtcccgcgcgatagcacaggtcgatggtctagtt 49453230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 38362731 - 38362859
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||    
T  38362731 atggacatactatgatatggtacagtaccaatgtctatgataattaatattatgaatttaattagaacaattatgacattcaactaaactattttattac 38362830  T
Q  113 atgttactctcaaatattaccttcgatat 141  Q
    || ||||  ||||||||||||||||||||    
T  38362831 atattaccgtcaaatattaccttcgatat 38362859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 51657245 - 51657340
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||  ||||| ||||||||||||||||||||||    
T  51657245 acaattatgacattcatctaaactattttgttacttgttaccctcaaatattaccttccatatgacatgtgcgttagcacgggtcgatggtctagt 51657340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 49067175 - 49067080
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  49067175 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgacccgtgcgttagcacgggtcgatggtctagt 49067080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 40823603 - 40823706
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatt 178  Q
    ||||| |||||||| |||||||||||||| |||| | ||||  ||||||||||||||| ||||||| |||||  ||||||||||||||||||||| ||||    
T  40823603 acaatcatgacattcatctaaactatttttttacctattacggtcaaatattaccttccatatgacccgtgccttagcacgggtcgatggtctag-tatt 40823701  T
Q  179 tataa 183  Q
    |||||    
T  40823702 tataa 40823706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 48314571 - 48314664
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtcta 172  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| ||| || ||||||||||||||| ||||    
T  48314571 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgacccgtacgttagcacgggtcgatgatcta 48314664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 13495951 - 13496038
Alignment:
Q  87 gacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||| |||||||||||||| |||| | ||||  ||||||||||||||||||||||| | | || ||||||||||||||||||||||    
T  13495951 gacattcatctaaactattttattacctattaccgtcaaatattaccttcgatatgacccttacgttagcacgggtcgatggtctagt 13496038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 5557889 - 5557984
Alignment:
Q  81 aattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtta 176  Q
    |||||||||||| ||||||| ||||||||||| | |||   ||||||||||| ||| |||||||  ||||| ||||||||| | ||||||| ||||    
T  5557889 aattatgacattcatctaaattattttgttacctattatcatcaaatattacattccatatgacctgtgcgttagcacgggccaatggtcttgtta 5557984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 30761303 - 30761264
Alignment:
Q  138 atatgactcgtgcgatagcacgggtcgatggtctagttat 177  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  30761303 atatgacccgtgcgatagcacgggtggatggtctagttat 30761264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 53926380 - 53926345
Alignment:
Q  140 atgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||||||||||| |||||||||||||||||||||||    
T  53926380 atgactcgtgcgttagcacgggtcgatggtctagtt 53926345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 28078784 - 28078623
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||| |||||||||    
T  28078784 atggacataatatgatatggtacagtaccaatgtctatgataattaatattatgaatttaattagaacaattatgacattcaattaaactcttttgttac 28078685  T
Q  113 atgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||| |||   ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  28078684 atgtcactgctaaatattaccttcgatatgacccgtgcgatatcacgggtcgatggtctagt 28078623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 26898930 - 26898834
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| |||| | |||||||||||||||||||||||    
T  26898930 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgacccgtgtggtagcacgggtcgatggtctagtt 26898834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 8674808 - 8674894
Alignment:
Q  15 ggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaac 101  Q
    |||||| |||||||||| |||| ||||||| | ||||||||||||||||||||||||||| | ||||||||||||||| | ||||||    
T  8674808 ggacataatatgatatggtacaataccaatatatatgataattaatattatgaatttaattaaaacaattatgacattcaactaaac 8674894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 8685487 - 8685573
Alignment:
Q  15 ggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaac 101  Q
    |||||| |||||||||| |||| ||||||| | ||||||||||||||||||||||||||| | ||||||||||||||| | ||||||    
T  8685487 ggacataatatgatatggtacaataccaatatatatgataattaatattatgaatttaattaaaacaattatgacattcaactaaac 8685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 14366039 - 14365977
Alignment:
Q  81 aattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatga 143  Q
    ||||||||||||||||||||||||||||||   | ||||  ||||||||| ||||||||||||    
T  14366039 aattatgacatttatctaaactattttgttttctattaccatcaaatattgccttcgatatga 14365977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 29379938 - 29380062
Alignment:
Q  13 atggacatcatatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttac 112  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  29379938 atggacataatatgatatggtacagtaccaatgtctatgataattaatattatgaatttaattagaacaattatgacattcaactaaactattttgttac 29380037  T
Q  113 atgttactctcaaatattaccttcg 137  Q
    ||||||||  |||||||||| ||||    
T  29380038 atgttactgccaaatattactttcg 29380062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 42691724 - 42691629
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| |||||||||||||||||| || | ||  ||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  42691724 acaatcatgacattcatctaaactattttgttagatatcaccatcaaatattaccttccatatgactcgtgcgttagcacaggtcgatggtctagt 42691629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 19121372 - 19121278
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttattt 179  Q
    |||||||| ||||||||||||||||||| | ||||  | ||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||    
T  19121372 atgacattcatctaaactattttgttacctattaccgtgaaatattaccttccatatgaccagtgcgttagcacgggtcgatggtctagttattt 19121278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 17413597 - 17413501
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||  ||||| |   ||||||||||||||||||||    
T  17413597 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatatgatccgtgctaacacacgggtcgatggtctagtt 17413501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 5399100 - 5399175
Alignment:
Q  99 aactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||| | ||||  |||||||||||||||||||||||  ||||| ||| | || |||||||||||||    
T  5399100 aactattttgttacctattaccgtcaaatattaccttcgatatgacgtgtgcgttagtatggatcgatggtctagt 5399175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 35392219 - 35392147
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcg 151  Q
    ||||| |||| ||| ||||||||||||||||||| | ||||  ||||||||||| ||| |||| || ||||||    
T  35392219 acaatcatgatattcatctaaactattttgttacctattaccgtcaaatattactttccatatcacccgtgcg 35392147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 43622691 - 43622743
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatatta 131  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||    
T  43622691 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatatta 43622743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 1354 - 1259
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||  | ||||| ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||    
T  1354 acaatcatgacattcatctaaactattttgttatctattactgtcaaatattaccttccatatgacccgtgcgttagcacggatcgatggtctagt 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 729013 - 729104
Alignment:
Q  84 tatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||| ||||||||||||| ||||| | ||||  ||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  729013 tatgacattcatctaaactatttggttacctattaccgtcaaatattaccttcgatatgacccgtacgttagcacgggtcgatggtctagtt 729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 36159375 - 36159521
Alignment:
Q  23 tatgatatgatacagtaccaatgtctatgataattaatattatgaatt-taatcagaacaattatgacatttatctaaactattttgttacatgttactc 121  Q
    |||| |||| ||||||||||| ||||||| |  ||||||||||||| | | ||  || |||| |||||||| ||||||||||||||||||| | ||||      
T  36159375 tatgttatggtacagtaccaacgtctatgcttcttaatattatgaaatattatatga-caatcatgacattcatctaaactattttgttacctattaccg 36159473  T
Q  122 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggt 169  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||    
T  36159474 tcaaatattacctttcatatgactcgtgcgttagcacgggtcgatggt 36159521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 38029580 - 38029733
Alignment:
Q  23 tatgatatgatacagtaccaatgtctatgataattaatattatgaatttaatc-agaacaattatgacatttatctaaactattttgttacatgttactc 121  Q
    |||| |||| ||||||||||| ||||||| |  ||||||||||||| ||| |  |  ||||| || ||||| ||||||||||||||||||| | ||||      
T  38029580 tatgttatggtacagtaccaacgtctatgcttcttaatattatgaaattactatatgacaatcataacattcatctaaactattttgttacctattaccg 38029679  T
Q  122 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||||||||| ||||||  |||| | |||||||||||||||||||||||    
T  38029680 tcaaatattaccttcaatatgatccgtgtgttagcacgggtcgatggtctagtt 38029733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 16718882 - 16718977
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| |||| || ||||| |  ||||||||||||||||||||    
T  16718882 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatataacccgtgctaatgcacgggtcgatggtctagt 16718977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 17693092 - 17693187
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| |||| || ||||| |  ||||||||||||||||||||    
T  17693092 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatataacccgtgctaatgcacgggtcgatggtctagt 17693187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 29322634 - 29322729
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||| ||||||||||||||||||  | ||||  ||||||||||||||| |||||||  ||||| |||||||||| |||||| ||||    
T  29322634 acaattatgacattcatctaaactattttgttatctattaccgtcaaatattaccttccatatgaccggtgcgttagcacgggtagatggtttagt 29322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 39703978 - 39703883
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||| ||| | ||||  ||| || |||||||||| ||||| |||||| ||||||||||||||||||||||    
T  39703978 acaatcatgacattcatctaaactattttgctacctattaccgtcatattttaccttcgaaatgacccgtgcgttagcacgggtcgatggtctagt 39703883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 40462404 - 40462315
Alignment:
Q  85 atgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||| |||||||||||||| ||||   ||||  ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  40462404 atgacattcatctaaactattttattaccaattaccatcaaatattacctttcatatgacccgtgcgttagcacgggtcgatggtctagt 40462315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 26455241 - 26455312
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgc 150  Q
    ||||| |||||||||||||||||||||||||||  | ||||  ||||||||||||||||||||||| |||||    
T  26455241 acaatcatgacatttatctaaactattttgttatctattaccgtcaaatattaccttcgatatgacccgtgc 26455312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 34405149 - 34405054
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| || |||||||||||||||| | ||||  ||||||||||||||| |||| || ||| || |||||||  |||||||||||||    
T  34405149 acaatcatgacattcatttaaactattttgttacttattaccgtcaaatattaccttccatattacccgtacgttagcacgaatcgatggtctagt 34405054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 24396536 - 24396474
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatat 141  Q
    ||||| |||||||| ||||||| ||||||||||| | ||||  ||||||||||||||| ||||    
T  24396536 acaatcatgacattcatctaaattattttgttacctattaccgtcaaatattaccttccatat 24396474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 2732881 - 2732828
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattac 132  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  |||||||||||    
T  2732881 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattac 2732828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 20078065 - 20078113
Alignment:
Q  84 tatgacatttatctaaactattttgttacatgttactctcaaatattac 132  Q
    ||||||||| ||||||||||||||||||| | ||||  |||||||||||    
T  20078065 tatgacattcatctaaactattttgttacctattaccgtcaaatattac 20078113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 25629650 - 25629537
Alignment:
Q  27 atatgatacagtaccaatgtctatgataattaatattatgaatttaatcagaacaattatgacatttatctaaactattttgttacatgttactctcaaa 126  Q
    ||||| || |||| ||| ||||||| ||||||||||||||| || ||| || |||||||||||||| | |||||||||||||||||||||||    ||||    
T  25629650 atatggtaaagtaacaacgtctatggtaattaatattatgatttgaattaggacaattatgacattcaactaaactattttgttacatgttagcgccaaa 25629551  T
Q  127 tattaccttcgata 140  Q
    ||||||||||||||    
T  25629550 tattaccttcgata 25629537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 41842915 - 41842816
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatt 178  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||| ||||||| ||| |||||||  ||||  ||||||||||||||||||||||||||    
T  41842915 acaatcatgacattcatctaaactattttgttacctattaccgtcagatattactttccatatgacctgtgcattagcacgggtcgatggtctagttatt 41842816  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 34893119 - 34893023
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||||||||||||| || |||||| ||||||||| | ||||  |||||||||||| ||  ||||||| ||||| ||||||||||| |||||||||||    
T  34893119 acaattatgacattcatttaaactgttttgttacctattaccgtcaaatattaccctccttatgacttgtgcgttagcacgggtcaatggtctagtt 34893023  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 37063918 - 37063999
Alignment:
Q  96 ctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttat 177  Q
    ||||||||||||||||| | ||| | ||||||||||| ||||||||||| ||||| |  ||||||||| |||||||||||||    
T  37063918 ctaaactattttgttacttattattgtcaaatattactttcgatatgacccgtgctaacgcacgggtcaatggtctagttat 37063999  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 16913244 - 16913160
Alignment:
Q  79 acaattatgacatttatctaaactattttgtt-acatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggt 162  Q
    ||||| ||||| || ||||||||||||||||| |||| ||||  ||||||||||||||| ||||||| |||||| ||||||||||    
T  16913244 acaatcatgactttcatctaaactattttgtttacatattaccgtcaaatattaccttccatatgacccgtgcgttagcacgggt 16913160  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 27853823 - 27853769
Alignment:
Q  127 tattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttat 181  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  27853823 tattaccttcaatatgacccgtgcgttagcacgggtcgatggtctagttgtttat 27853769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 15096793 - 15096696
Alignment:
Q  79 acaattatgacatttatctaaactattttgtt-acatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    |||||||||||||| |||||||||||||| || || | ||||  |||||||||||||||||||| || ||| || ||||  || ||||| ||||||||    
T  15096793 acaattatgacattcatctaaactatttttttaacctattaccatcaaatattaccttcgatataacccgtacgttagcttggttcgatagtctagtt 15096696  T

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Target: scaffold0210 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 17760 - 17835
Alignment:
Q  99 aactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  17760 aactattttgttacatattaccgtcaaatattaccttcgaaatgactcgtgcattagcacgggtcgatggtctagt 17835  T

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Target: scaffold0210; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 25652 - 25727
Alignment:
Q  99 aactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  25652 aactattttgttacatattaccgtcaaatattaccttcgaaatgactcgtgcattagcacgggtcgatggtctagt 25727  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 37995369 - 37995464
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||||||||||||||||||||||| |  |||  ||||||||||||||| ||||||  |||| | ||||||||||||||||||||||    
T  37995369 acaatcatgacatttatctaaactattttgttacctactaccgtcaaatattaccttccatatgatccgtgtgttagcacgggtcgatggtctagt 37995464  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 12008555 - 12008478
Alignment:
Q  98 aaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||||||||  | ||||| ||||||||||||||||||||||| |||| | ||||||||||| |||||||||||    
T  12008555 aaactattttgttatctattactgtcaaatattaccttcgatatgacccgtgtgttagcacgggtcaatggtctagtt 12008478  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 10128652 - 10128587
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgac 144  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  |||||||||||||||||||||||    
T  10128652 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttcgatatgac 10128587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 25882733 - 25882661
Alignment:
Q  99 aactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtct 171  Q
    |||||||||||||| | ||||  |||||||||||||||||||||||  ||||| |||||||||| ||||||||    
T  25882733 aactattttgttacctattaccgtcaaatattaccttcgatatgacatgtgcgttagcacgggttgatggtct 25882661  T

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Target: scaffold0044 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 87829 - 87924
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||||||||| ||||  |||||||||| |||  |||||||||||||| ||||| || ||||| |||||||    
T  87829 acaatcatgacattcatctaaactattttgttacatattaccgtcaaatattatctttcatatgactcgtgcgttagcaaggatcgatagtctagt 87924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 50290335 - 50290430
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| |||||||| ||||||||||||||  ||| | ||||  ||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||    
T  50290335 acaatcatgacattcatctaaactatttttctacctattaccgtcaaatattacgttccatatgacccgtgcgttagcacgggtcgatggtctagt 50290430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 39268340 - 39268247
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtcta 172  Q
    |||||||||||||| ||||||| || |||||||| | |||   ||||||||||| ||||||||||| |||||| |||| |||||||||||||||    
T  39268340 acaattatgacattcatctaaagtactttgttacctattatcgtcaaatattacattcgatatgacccgtgcgttagcgcgggtcgatggtcta 39268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 8998819 - 8998898
Alignment:
Q  96 ctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||||||||||||| | ||||  ||||||||||| |||||||||||  ||||| ||||||||||| |||||||||||    
T  8998819 ctaaactattttgttacctattaccgtcaaatattacattcgatatgacctgtgcgttagcacgggtcaatggtctagtt 8998898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 49193217 - 49193134
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggt 169  Q
    ||||||| | ||||| ||||||||||| | ||||  ||||||||||| ||| ||||||| |||||| |||||||| || |||||    
T  49193217 tgacattcaactaaattattttgttacctattaccgtcaaatattacattcaatatgacacgtgcgttagcacggatcaatggt 49193134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 23085936 - 23085899
Alignment:
Q  138 atatgactcgtgcgatagcacgggtcgatggtctagtt 175  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  23085936 atatgacccgtgcgttagcacgggtcgatggtctagtt 23085899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 52407969 - 52407913
Alignment:
Q  80 caattatgacatttatctaaactattttgttacatgttactctcaaatattaccttc 136  Q
    |||| |||||||| ||||||||||||||||||| | ||||  |||||| ||||||||    
T  52407969 caatcatgacattcatctaaactattttgttacctattaccgtcaaatgttaccttc 52407913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 12683 - 12588
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||| ||| |||| || |||||||||||||||| | ||||  ||||||||||| ||| ||||||| |||||  ||||||||||||||||||||||    
T  12683 acaatcatgtcattcatttaaactattttgttacctattaccgtcaaatattacattccatatgacccgtgcattagcacgggtcgatggtctagt 12588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 156 - 68
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| ||||||||||||| ||||| | ||||  || ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  156 tgacattcatctaaactatttagttacctattaccgtctaatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 150 - 238
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| ||||||||||||| ||||| | ||||  || ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  150 tgacattcatctaaactatttagttacctattaccgtctaatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 10061 - 10149
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| ||||||||||||| ||||| | ||||  || ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  10061 tgacattcatctaaactatttagttacctattaccgtctaatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 10149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 28919 - 28831
Alignment:
Q  86 tgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| ||||||||||||| ||||| | ||||  || ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  28919 tgacattcatctaaactatttagttacctattaccgtctaatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 28831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 8891 - 8829
Alignment:
Q  79 acaattatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatat 141  Q
    ||||| |||||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||    
T  8891 acaatcatgacattcatctaaactattttgttacctattaccgtcaaatattaccttccatat 8829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 13691 - 13602
Alignment:
Q  84 tatgacatttatctaaactattttgttacatgttactctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 174  Q
    ||||||| | ||||||||||||||||||  | ||||  |||||||| | ||||||||| ||  ||||| ||||||||||||||||||||||    
T  13691 tatgacaatcatctaaactattttgttatctattaccatcaaatat-atcttcgatataacctgtgcgttagcacgggtcgatggtctagt 13602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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