View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9541_low_2 (Length: 556)

Name: NF9541_low_2
Description: NF9541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9541_low_2
NF9541_low_2
[»] chr5 (4 HSPs)
chr5 (1-319)||(28385206-28385524)
chr5 (1-315)||(12540557-12540871)
chr5 (411-480)||(12540967-12541036)
chr5 (411-480)||(28385616-28385685)
[»] chr7 (2 HSPs)
chr7 (3-315)||(3417520-3417832)
chr7 (411-480)||(3417355-3417424)
[»] chr4 (6 HSPs)
chr4 (364-546)||(48958382-48958564)
chr4 (144-315)||(48958159-48958333)
chr4 (59-310)||(48965259-48965510)
chr4 (410-532)||(48912118-48912240)
chr4 (366-549)||(48965566-48965749)
chr4 (189-315)||(48961353-48961482)
[»] chr2 (6 HSPs)
chr2 (2-313)||(13448236-13448547)
chr2 (2-315)||(13440073-13440386)
chr2 (2-315)||(13454707-13455020)
chr2 (414-546)||(13448648-13448780)
chr2 (414-505)||(13455119-13455210)
chr2 (414-504)||(13440485-13440575)
[»] chr6 (3 HSPs)
chr6 (398-549)||(12589925-12590076)
chr6 (420-547)||(12483222-12483349)
chr6 (219-315)||(12483454-12483556)
[»] chr8 (1 HSPs)
chr8 (364-475)||(12641311-12641422)
[»] scaffold0536 (3 HSPs)
scaffold0536 (410-527)||(10273-10388)
scaffold0536 (364-527)||(6289-6452)
scaffold0536 (406-500)||(1270-1364)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 28385206 - 28385524
Alignment:
Q  1 tagccttctctatgttatctctggtcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28385206 tagccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaattcttcggac 28385305  T
Q  101 tgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  28385306 tgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcctctacaattgagttccctccg 28385405  T
Q  201 caatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385406 caatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcct 28385505  T
Q  301 caaatcccttcggcagcca 319  Q
    |||||||||| ||||||||    
T  28385506 caaatccctttggcagcca 28385524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 12540557 - 12540871
Alignment:
Q  1 tagccttctctatgttatctctggtcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggac 100  Q
    ||||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||||||| ||||||    
T  12540557 tagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggac 12540656  T
Q  101 tgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccg 200  Q
       |||||| | |||||| |||   ||||||||| ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||     
T  12540657 ctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttccccca 12540756  T
Q  201 caatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcct 300  Q
    |||||||||| |||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| || || |||||||| |||||||||||||||||||    
T  12540757 caatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcct 12540856  T
Q  301 caaatcccttcggca 315  Q
    |||||||||||||||    
T  12540857 caaatcccttcggca 12540871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 12540967 - 12541036
Alignment:
Q  411 gcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaa 480  Q
    ||||||||||| |||||||| ||| | |||| |  |||||||||||| |||||||||| |||||||||||    
T  12540967 gcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaa 12541036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 28385616 - 28385685
Alignment:
Q  411 gcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaa 480  Q
    ||||||||||| |||||||||||||| ||||    |||||||||||| ||||||||||  ||||||||||    
T  28385616 gcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagttaa 28385685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 3 - 315
Target Start/End: Complemental strand, 3417832 - 3417520
Alignment:
Q  3 gccttctctatgttatctctggtcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggactg 102  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| || || |||||| ||  ||||||||||||||||||||| |||||||     
T  3417832 gccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggactt 3417733  T
Q  103 ttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgca 202  Q
     |||||| | ||||||||||   || |||||| ||||||  ||||||||||||||||||||||| || |||||||| || |||| |||||||||||| ||    
T  3417732 gtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccaca 3417633  T
Q  203 atgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctca 302  Q
    |||||||| ||||||||| |||||||||| |||||||||| |||| ||||||||||||||||| |  || ||||||||||||||||||||||||||||||    
T  3417632 atgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctca 3417533  T
Q  303 aatcccttcggca 315  Q
    |||||||||||||    
T  3417532 aatcccttcggca 3417520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 3417424 - 3417355
Alignment:
Q  411 gcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaa 480  Q
    ||||||||||| |||||||||||||| |||||   || ||||||||| ||||||||||||||||||||||    
T  3417424 gcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagttaa 3417355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 7e-75; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 364 - 546
Target Start/End: Original strand, 48958382 - 48958564
Alignment:
Q  364 caggaacaacccatacaaattcatgacccgcattttctattccactcgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatat 463  Q
    |||||||||||||||||||||| ||||| |    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48958382 caggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatat 48958481  T
Q  464 gtacaacactgagttaagtctcttcgagttgagccaactcagacaaccatgcacactaacaacattctcatttcccctctctg 546  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48958482 gtacaacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaacattctcatttcccctctctg 48958564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 48958159 - 48958333
Alignment:
Q  144 ggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatca 243  Q
    |||||||| ||||||||||| ||||||| |||||| || ||| | ||||||| |||||||||||||| |||| | ||||| |||  || |||||  ||||    
T  48958159 ggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatca 48958258  T
Q  244 gaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatcccttcggca 315  Q
     ||||||||||||||| ||||| || || |||||   ||||||||||||||||||||| || ||||| |||||||    
T  48958259 aaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggca 48958333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 310
Target Start/End: Original strand, 48965259 - 48965510
Alignment:
Q  59 acaccattccgtaacacctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcatt 158  Q
    ||||||||| ||  |||| |||||||||||||| | ||| |||  |||||||| ||| || |||  ||| || ||| ||||  ||||||| || |||||     
T  48965259 acaccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatc 48965358  T
Q  159 ggaactcccgcgccaacagcttctacaattgagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggccc 258  Q
    ||||| ||||| |||||||| || ||  | |||||||  || ||||| |||| |||  | ||||| || |||| |||||  |||||||| || || ||||    
T  48965359 ggaacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagccc 48965458  T
Q  259 aacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt 310  Q
    ||||||| || || |||||||||||||||||||||||||| || ||||||||    
T  48965459 aacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 532
Target Start/End: Complemental strand, 48912240 - 48912118
Alignment:
Q  410 cgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaagtctcttcgagttgagccaactcagacaa 509  Q
    |||||||||||||||||||||||| || |||| ||||  |||||||||||||||||||| ||| ||||||  |   |||||||| |||||||||| |||     
T  48912240 cgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacac 48912141  T
Q  510 ccatgcacactaacaacattctc 532  Q
     | |||||||| |||||| ||||    
T  48912140 tcgtgcacactcacaacactctc 48912118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 549
Target Start/End: Original strand, 48965566 - 48965749
Alignment:
Q  366 ggaacaacccatacaaattcatgacccgcattttctattccactcgcaatctcataaagttgtttatca-gataaataacatatgcttccaaagcatatg 464  Q
    |||| |||||||| ||| ||||||||||    ||||||| ||| ||||||||||||||| ||||||||  |||||  | || | ||||||||||| ||||    
T  48965566 ggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacga-cagaggcttccaaagcttatg 48965664  T
Q  465 tacaacactgagttaagtctcttcgagttgagccaactcagacaaccatgcacactaacaacattctcatttcccctctctgctt 549  Q
    ||||||||||||||| ||| ||| || ||||||||||||| |||  | ||||| || ||  || |||| | ||||||||||||||    
T  48965665 tacaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcccctctctgctt 48965749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 48961353 - 48961482
Alignment:
Q  189 gagttccccccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctt---tc 285  Q
    ||||||| ||||||||| |||| |||  | |||||||| | || || ||  |||| ||||||||||||||| ||| | || || |||||||||||   |     
T  48961353 gagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttctttt 48961452  T
Q  286 caatgtttctctcctcaaatcccttcggca 315  Q
    ||||||||||||| |||||||| |||||||    
T  48961453 caatgtttctctcttcaaatcctttcggca 48961482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 13448236 - 13448547
Alignment:
Q  2 agccttctctatgttatctctggtcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggact 101  Q
    ||||||||||||| |||||||| |||| ||||||||||||||| |   |||| | ||||||||||| ||  |||| ||||| |||||||||| ||||| |    
T  13448236 agccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaat 13448335  T
Q  102 gttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgc 201  Q
      |||||||| ||||||||||  ||| |||||| |||||   |||||||||||||||||||||||||| | |||||| |||||  |||||||||||||||    
T  13448336 tgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgc 13448435  T
Q  202 aatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctc 301  Q
    |||| |||| |||||||||||| ||||||| ||||||||||  ||| ||||||||||||||||| || || ||||||||||| || || |||||||| ||    
T  13448436 aatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttc 13448535  T
Q  302 aaatcccttcgg 313  Q
    ||||||||||||    
T  13448536 aaatcccttcgg 13448547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 13440073 - 13440386
Alignment:
Q  2 agccttctctatgttatctctggtcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggact 101  Q
    |||||||||||||||||| ||| |||||||||||| ||||||| ||  ||||||  |||||||||||||  |||| |||||||||||||||| ||| | |    
T  13440073 agccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaat 13440172  T
Q  102 gttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgc 201  Q
      ||||| || |||||| |||  ||| |||||| |||||   |||||||||||||||||||||||||| | |||||  ||||||||||||||||||||||    
T  13440173 tgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgc 13440272  T
Q  202 aatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctc 301  Q
    |||| |||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||| | || || |||||| || | | |||||||||||| ||    
T  13440273 aatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttc 13440372  T
Q  302 aaatcccttcggca 315  Q
     |||||||| ||||    
T  13440373 gaatccctttggca 13440386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 13454707 - 13455020
Alignment:
Q  2 agccttctctatgttatctctggtcaccaacttctttctctccccattaccatttgtacaccattccgtaacacctacttccactccaattcttcggact 101  Q
    ||||||||||||| ||||| || |||||||||||| ||||||| ||  |||| ||||||||||||| ||  |||| ||||| | |||||||| ||| |||    
T  13454707 agccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaact 13454806  T
Q  102 gttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcttctacaattgagttccccccgc 201  Q
      |||||| | |||||| |||  ||| |||||| ||||    ||||||||||||||||||||||||  || |||||| ||||| ||||||||||||||||    
T  13454807 tgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgc 13454906  T
Q  202 aatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctc 301  Q
    |||| |||| |||||||||||| |||||||  |||||||||  ||||||||||||||||||||| || || |||||||| ||  | |||||| |||| ||    
T  13454907 aatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttc 13455006  T
Q  302 aaatcccttcggca 315  Q
    ||||||||||||||    
T  13455007 aaatcccttcggca 13455020  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 546
Target Start/End: Original strand, 13448648 - 13448780
Alignment:
Q  414 atctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaagtctcttcgagttgagccaactcagacaaccat 513  Q
    ||||| || |||||||||||||| |||||    ||||||||||| |||||||||||||||||||||| |||||  || | |||||||||||| |   | |    
T  13448648 atctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgt 13448747  T
Q  514 gcacactaacaacattctcatttcccctctctg 546  Q
    ||||| | ||| ||  |||||||||||||||||    
T  13448748 gcacattcacagcaccctcatttcccctctctg 13448780  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 505
Target Start/End: Original strand, 13455119 - 13455210
Alignment:
Q  414 atctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaagtctcttcgagttgagccaactcag 505  Q
    |||||||| |||||||||| |||| |||||   ||||||||||| ||||||||||| |||||||||| |||||| ||||  ||||| |||||    
T  13455119 atctcatatagttgtttattagatgaataattgatgcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcag 13455210  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 414 - 504
Target Start/End: Original strand, 13440485 - 13440575
Alignment:
Q  414 atctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaagtctcttcgagttgagccaactca 504  Q
    |||||||| |||||||||||||| |||||    ||||||||||| |||||||||||||| ||||||| | |||  |||| |||||||||||    
T  13440485 atctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagttaactttctctgagtcgagccaactca 13440575  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 398 - 549
Target Start/End: Complemental strand, 12590076 - 12589925
Alignment:
Q  398 ttctattccactcgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaagtctcttcgagttgagc 497  Q
    |||||| |||| || ||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||||||  || ||||||||| |||    
T  12590076 ttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgagtttagc 12589977  T
Q  498 caactcagacaaccatgcacactaacaacattctcatttcccctctctgctt 549  Q
    |||||||||||  | |||||  | |||||| ||||||||||||| |||||||    
T  12589976 caactcagacactcttgcacgttcacaacactctcatttcccctatctgctt 12589925  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 547
Target Start/End: Complemental strand, 12483349 - 12483222
Alignment:
Q  420 taaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaagtctcttcgagttgagccaactcagacaaccatgcacac 519  Q
    ||||| ||||||||||| ||||  |||| ||| ||||||||||||||||||||||| ||   |  ||| ||||| ||||||||  ||||  ||||||| |    
T  12483349 taaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgc 12483250  T
Q  520 taacaacattctcatttcccctctctgc 547  Q
    | |||||| |||| ||||||||||||||    
T  12483249 tcacaacactctcgtttcccctctctgc 12483222  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 12483556 - 12483454
Alignment:
Q  219 cccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctt------tccaatgtttctctcctcaaatcccttcg 312  Q
    ||||| ||||||| |||||| ||||| || ||||| ||||| |||||||| || |||||| ||||      || ||||||||||||||||||||||||||    
T  12483556 cccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatcttattccttctaatgtttctctcctcaaatcccttcg 12483457  T
Q  313 gca 315  Q
    |||    
T  12483456 gca 12483454  T

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Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 364 - 475
Target Start/End: Complemental strand, 12641422 - 12641311
Alignment:
Q  364 caggaacaacccatacaaattcatgacccgcattttctattccactcgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatat 463  Q
    |||||||||||||||||||||| ||||| | |||||||||||| ||||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||||    
T  12641422 caggaacaacccatacaaattcgtgacctgaattttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatat 12641323  T
Q  464 gtacaacactga 475  Q
    ||| ||||||||    
T  12641322 gtataacactga 12641311  T

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Target: scaffold0536 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 410 - 527
Target Start/End: Complemental strand, 10388 - 10273
Alignment:
Q  410 cgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaagtctcttcgagttgagccaactcagacaa 509  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||  ||  || |||| |||| ||||||||||||||     
T  10388 cgcaatctcataaagttgtttatctgaaaaataacataggcttccaaagcaaatgtacaacactga--tatctcgcttcaagttaagccaactcagacac 10291  T
Q  510 ccatgcacactaacaaca 527  Q
     |||||||||| ||||||    
T  10290 tcatgcacactcacaaca 10273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 364 - 527
Target Start/End: Complemental strand, 6452 - 6289
Alignment:
Q  364 caggaacaacccatacaaattcatgacccgcattttctattccactcgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatat 463  Q
    |||||||||||||||  ||||  |||||||    |||||| ||||  |||||||| |||||||||||||| |  |||   |||| |||||||||||||||    
T  6452 caggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatat 6353  T
Q  464 gtacaacactgagttaagtctcttcgagttgagccaactcagacaaccatgcacactaacaaca 527  Q
    ||||||||||||||||  |  ||||||||  ||||||||||||||  |||||||||| ||||||    
T  6352 gtacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaaca 6289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 500
Target Start/End: Complemental strand, 1364 - 1270
Alignment:
Q  406 cactcgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactgagttaagtctcttcgagttgagccaa 500  Q
    |||| ||||||||||| | |||||||||||  ||||| || | | |||||||||||||||| |  |||||||||  || ||| ||||||||||||    
T  1364 cacttgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagttgagccaa 1270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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